Agricultural and Biosystems Engineering Publications

 
This series contains articles and book chapters authored or co-authored by faculty, students and staff of the Department of Agricultural and Biosystems Engineering at Iowa State University.

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Publications from 2017

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Relating Watershed Characteristics to Elevated Stream Escherichia coli Levels in Agriculturally Dominated Landscapes: An Iowa Case Study, Conrad Brendel and Michelle L. Soupir

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A Meta-analysis of the Effect of Industry Engagement on Student Learning in Undergraduate Programs, Caleb Burns and Shweta Chopra

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The Green Experiment: Cities, Green Stormwater Infrastructure, and Sustainability, Christopher M. Chini, James F. Canning, Kelsey L. Schreiber, Joshua M. Peschel, and Ashlynn S. Stillwell

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Influence of UV Treatment on the Food Safety Status of a Model Aquaponic System, Sai Deepikaa Elumalai, Angela M. Shaw, D. Allen Pattillo, Christopher J. Currey, Kurt A. Rosentrater, and Kun Xie

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Pilot-Scale Denitrification Bioreactors for Replicated Field Research, Natasha L. Hoover, Michelle L. Soupir, Richard D. VanDePol, Timothy R. Goode, and Ji Yeow Law

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Imagining tomorrow's university: open science and its impact, Adina Howe, Michael D. Howe, Amy L. Kaleita, and D. Raj Raman

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Evaluating Ventilation Rates Based on New Heat and Moisture Production Data for Swine Production, Yanxi Lu, Morgan Hayes, John P. Stinn, Tami Brown-Brandl, and Hongwei Xin

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Pilot-scale testing of renewable biocatalyst for swine manure treatment and mitigation of odorous VOCs, ammonia and hydrogen sulfide emissions, Devin L. Maurer, Jacek A. Koziel, Kelsey M. Bruning, and David B. Parker

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Maximum soil organic carbon storage in Midwest U.S. cropping systems when crops are optimally nitrogen-fertilized, Hanna J. Poffenbarger, Daniel W. Barker, Matthew J. Helmers, Fernando E. Miguez, Daniel C. Olk, John E. Sawyer, Johan Six, and Michael J. Castellano

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Ammonia and Carbon Dioxide Emissions of Three Laying-Hen Housing Systems as Affected by Manure Accumulation Time, Timothy A. Shepherd, Hongwei Xin, John P. Stinn, Morgan D. Hayes, Yang Zhao, and Hong Li

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Detection of extremely low concentration waterborne pathogen using a multiplexing self-referencing SERS microfluidic biosensor, Chao Wang, Foram Madiyar, Chenxu Yu, and Jun Li

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Anhydrous Ammonia Pretreatment of Corn Stover and Enzymatic Hydrolysis of Glucan from Pretreated Corn Stover, Minliang Yang, Weitao Zhang, and Kurt A. Rosentrater

Publications from 2016

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Evaluating Soil Tillage Practices Using X-Ray Computed Tomography and Conventional Laboratory Methods, Maria Ambert-Sanchez, Steven K. Mickelson, Syed I. Ahmed, Joseph N. Gray, and David F. Webber

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A Runoff and Sediment Routing Model for Open Lot Beef Feeding Facilities, Daniel S. Andersen

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Effects of Amylose-To-Amylopectin Ratios on Binding Capacity of DDGS/Soy-Based Aquafeed Blends, Ferouz Y. Ayadi, Kurt A. Rosentrater, K. Muthukumarappan, and S. Kannadhason

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Cloud-based data management system for automatic real-time data acquisition from large-scale laying-hen farms, Hongqian Chen, Hongwei Xin, Guanghui Teng, Chaoying Meng, Xiaodong Du, Taotao Mao, and Cheng Wang

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RefSoil: A reference database of soil microbial genomes, Jinlyung Choi, Fan Yang, Ramunas Stepanauskas, Erick Cardenas, Aaron Garoutte, Ryan Williams, Jared Flater, James M. Tiedje, and Kirsten S. Hofmockel

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Strategies to improve reference databases for soil microbiomes, Jinlyung Choi, Fan Yang, Ramunas Stepanauskas, Erick Cardenas, Aaron Garoutte, Ryan Williams, Jared Flater, James M. Tiedje, Kirsten S. Hofmockel, and Brian K. Gelder

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Modeling Intermediary Satisfaction with Mandatory Adoption of E-government Technologies for Food Distribution, Shweta Chopra and Prashant Rajan

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Modeling and Model Validation of a Chemical Injection Sprayer System, Kleber R. Felizardo, Heitor V. Mercaldi, Paulo E. Crubinel, Vilma A. Oliveira, and Brian L. Steward

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The effect of chicken blood and its components on wastewater characteristics and sewage surcharges, R. A. Garcia, C. M. Nieman, R. A. Haylock, Kurt A. Rosentrater, and G. J. Piazza

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Methodologies for probing the metatranscriptome of grassland soil, Aaron Garoutte, Erick Cardenas, James Tiedje, and Adina Howe

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Food safety modernization act: A quality management approach to identify and prioritize factors affecting adoption of preventive controls among small food facilities, Abhay K. Grover, Shweta Chopra, and Gretchen A. Mosher

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Energy Use for Field Operations, Crop Drying, and Swine Housing on University Farms, H. Mark Hanna, Jay D. Harmon, and Dana D. Schweitzer

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Influence of Storage Bin Design and Feed Characteristics on Flowability of Pig Diets Containing Maize Distillers Dried Grains with Solubles, Adrienne M. Hilbrands, Kurt A. Rosentrater, Gerald C. Shurson, and Lee J. Johnston

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Woodchip Denitrification Bioreactors: Impact of Temperature and Hydraulic Retention Time on Nitrate Removal, Natasha L. Hoover, Alok Bhandari, Michelle L. Soupir, and Thomas B. Moorman

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Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil, Adina Howe, Fan Yang, Ryan J. Williams, Folker Meyer, and Kirsten S. Hofmockel

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Effects of tillage and poultry manure application rates on Salmonella and fecal indicator bacteria concentrations in tiles draining Des Moines Lobe soils, C. E. Hruby, M. L. Soupir, T. B. Moorman, M. Shelley, and R. S. Kanwar

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Student Perspectives on a New Online Biomass Production Module for Fundamentals of Biorenewable Resources and Technology, Darren H. Jarboe, D. Raj Raman, Thomas J. Brumm, Robert A. Martin, and Scott McLeod

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Differential Impacts of Online Delivery Methods on Student Learning: A Case Study in Biorenewables, Darren H. Jarboe, D. Raj Raman, Thomas J. Brumm, Robert Martin, and Scott McLeod

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Pre-Enrollment Identification of At-Risk Students in a Large Engineering College, Amy L. Kaleita, Gregory R. Forbes, Ekaterina Ralston, Jonathan I. Compton, Darin Wohlgemuth, and D. Raj Raman

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Successful grant-writing strategies for junior scientists: An American public university perspective, Jacek A. Koziel

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Automatic recognition of lactating sow behaviors through depth image processing, F. Lao, T. Brown-Brandl, J. P. Stinn, K. Liu, G. Teng, and H. Xin

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Identification of Soil Microbes Capable of Utilizing Cellobiosan, Jieni Lian, Jinlyung Choi, Yee Shiean Tan, Adina C. Howe, Zhiyou Wen, and Laura R. Jarboe

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Estimating Ventilation Rates of Animal Houses through CO2 Balance, Zifei Liu, Wendy Powers, and Jay D. Harmon

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Fate and transport of tylosin-resistant bacteria and macrolide resistance genes in artificially drained agricultural fields receiving swine manure, Elizabeth M. Luby, Thomas B. Moorman, and Michelle L. Soupir

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Engaging Students in the Land O’Lakes Global Food Challenge, John Lumkes Jr. and Kurt A. Rosentrater

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Summary of performance data for technologies to control gaseous, odor, and particulate emissions from livestock operations: Air management practices assessment tool (AMPAT), Devin L. Maurer, Jacek A. Koziel, Jay D. Harmon, Steven J. Hoff, Angela M. Rieck-Hinz, and Daniel S. Andersen

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Effective Systems Depend on Informed Decisions, Gretchen Mosher

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Applying What You Have Learned, Gretchen Mosher, Norman Muzzy, and Dana Woolley

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Surface Application of Soybean Peroxidase and Calcium Peroxide for Reducing Odorous VOC Emissions from Swine Manure Slurry, David B. Parker, Morgan Hayes, Tami M. Brown-Brandl, Bryan L. Woodbury, Mindy Spiehs, and Jacek A. Koziel

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Urease Inhibitor for Reducing Ammonia Emissions from an Open-Lot Beef Cattle Feedyard in the Texas High Plains, David B. Parker, Marty B. Rhoads, Bok-Haeng Baek, Jacek A. Koziel, Heidi M. Waldrip, and Richard W. Todd

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Designing for Food Security: Portability and the Expansion of User Freedoms Through the COREPDS in Chhattisgarh, India, Prashant Rajan, Shweta Chopra, A. K. Somasekhar, and Chad M. Laux

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Approaching Safety through Quality: Factors Influencing College Student Perceptions, Sai K. Ramaswamy and Gretchen A. Mosher

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Design and Feasibility of an Impact-Based Odor Control System, Brett C. Ramirez, Steven J. Hoff, and Lun Tong

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Effects of water stress on total biomass, tuber yield, harvest index and water use efficiency in Jerusalem artichoke, Ruttanachira Ruttanaprasert, Sanun Jogloy, Nimitr Vorasoot, Thawan Kesmala, Rameshwar S. Kanwar, C. Corley Holbrook, and Aran Patanothai

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Analysis of Odorants in Marking Fluid of Siberian Tiger (Panthera tigris altaica) Using Simultaneous Sensory and Chemical Analysis with Headspace Solid-Phase Microextraction and Multidimensional Gas Chromatography-Mass Spectrometry-Olfactometry, Simone B. Soso and Jacek A. Koziel

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Sediment E. coli as a Source of Stream Impairment, Michelle Soupir and Pramod Pandey

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Measured and predicted temperature of maize grain (Zea mays L.) under hermetic storage conditions, Rashid A. Suleiman and Kurt A. Rosentrater

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Periodic Physical Disturbance: An Alternative Method for Controlling Sitophilus zeamais (Maize Weevil) Infestation, Rashid A. Suleiman, Kurt A. Rosentrater, and Bernard Chove

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Impact of Dietary Carbohydrate and Protein Source and Content on Swine Manure Foaming Properties, Mark B. Van Weelden, Daniel S. Andersen, Brian J. Kerr, Steven L. Trabue, Kurt A. Rosentrater, Laura M. Pepple, and Tania M. B. dos Santos

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Impact of fiber source and feed particle size on swine manure properties related to spontaneous foam formation during anaerobic decomposition, M. B. Van Weelden, D. S. Andersen, B. J. Kerr, S. L. Trabue, and L. M. Pepple

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Design of variable screw pitch rib snapping roller and residue cutter for corn harvesters, Gang Wang, Honglei Jia, Lie Tang, Jian Zhuang, Xinming Jiang, and Mingzhuo Guo

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Use of recycled containers for hermetic maize storage In East Africa, A. Yakubu, L. A. Wilson, C. J. Bern, and T. J. Brumm

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Mortality Rate of Weaned and Feeder Pigs as Affected by Ground Transport Conditions, Yang Zhao, Hongwei Xin, and Jay D. Harmon

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Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter, Lucia Žifčáková, Tomáš Větrovský, Adina Howe, and Petr Baldrian

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Quantifying Attachment and Antibiotic Resistance of Escherichia coli from Conventional and Organic Swine Manure, Martha R. Zwonitzer, Michelle L. Soupir, Laura R. Jarboe, and Douglas R. Smith

Publications from 2015

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Phosphorus Sorption Capacity of Six Iowa Soils before and after Five Years of Use as Vegetative Treatment Areas, Daniel S. Andersen, Matthew J. Helmers, and Robert T. Burns

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Lab-assay for estimating methane emissions from deep-pit swine manure storages, D. S. Andersen, M. B. Van Weelden, S. L. Trabue, and L. M. Pepple

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Scaffolding in Introductory Engineering Courses, Peggy C. Boylan-Ashraf, Steven A. Freeman, and Mack C. Shelley

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Studying Plant–Insect Interactions with Solid Phase Microextraction: Screening for Airborne Volatile Emissions Response of Soybeans to the Soybean Aphid, Aphis glycines Matsumura (Hemiptera: Aphididae), Lingshuang Cai, Jacek A. Koziel, and Matthew E. O'Neal

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Odor and Odorous Chemical Emissions from Animal Buildings: Part 3. Chemical Emissions, Lingshuang Cai, Jacek A. Koziel, Shicheng Zhang, Albert J. Heber, Erin L. Cortus, David B. Parker, Steven J. Hoff, Gang Sun, Katie Y. Heathcote, Larry D. Jacobson, Neslihan Akdeniz, Brian Hetchler, Sarah D. Bereznicki, Edward A. Caraway, and Teng T. Lim

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Applying Lean Principles to Mitigate the “July Effect”: Addressing Challenges Associated with Cohort Turnover in Teaching Hospitals, Shweta Chopra and Manasa Kondapalli

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The khmer software package: enabling efficient nucleotide sequence analysis, Michael R. Crusoe, Hussein F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina C. Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Erin McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel S. Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Tremble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, and C. Titus Brown

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AgBufferBuilder: A geographic information system (GIS) tool for precision design and performance assessment of filter strips, Mike G. Dosskey, Surendran Neelakantan, Tom G. Mueller, Todd Kellerman, Matt J. Helmers, and Eduardo Rienzi

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The Efficiency of Biofilters at Mitigating Airborne MRSA from a Swine Nursery, Dwight D. Ferguson, Tara C. Smith, Kelley J. Donham, and Steven J. Hoff

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Identifying Potential Locations for Grassed Waterways using Terrain Attributes and Precision Conservation Technologies, Rohith K. Gali, Michelle L. Soupir, Amy L. Kaleita, and Prasad Daggupati

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Comparison of Timing and Volume of Subsurface Drainage under Perennial Forage and Row Crops in a Tile-Drained Field in Iowa, Ryan J. Goeken, Xiaobo Zhou, and Matthew J. Helmers

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Detection of Sludge Contamination in Crude Palm Oil Using Dielectric Spectroscopy, Khairunnisa Hamdan, Samsuzana Abd Aziz, Azmi Yahya, Fakhrul Zaman Rokhani, and Brian L. Steward

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Woodchip Denitrification Bioreactors: Impact of Temperature and Hydraulic Retention Time on Nitrate Removal, Natasha L. Hoover, Alok Bhandari, Michelle L. Soupir, and Thomas Moorman

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Effects of Poultry Manure Application on Phosphorus in Soil and Tile Drain Water Under a Corn-Soybean Rotation, Natasha L. Hoover, Ramesh Kanwar, Michelle L. Soupir, and Carl Pederson

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Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial), Adina C. Howe and Patrick S. G. Chain

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Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice, Adina C. Howe, Daina L. Ringus, Ryan J. Williams, Zi-Ning Choo, Stephanie M. Greenwald, Sarah M. Owens, Maureen L. Coleman, Folker Meyer, and Eugene B. Chang

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Denitrification and Nitrous Oxide Emissions in Annual Croplands, Perennial Grass Buffers, and Restored Perennial Grasslands, Javed Iqbal, Timothy B. Parkin, Matthew J. Helmers, Xiaobo Zhou, and Michael J. Castellano

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Impact of commercial housing systems and nutrient and energy intake on laying hen performance and egg quality parameters, D. M. Karcher, D. R. Jones, Z. Abdo, Yang Zhao, Timothy A. Shepherd, and Hongwei Xin

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Corn Stover Nutrient Removal Estimates for Central Iowa, USA, Douglas Karlen, John Kovar, and Stuart J. Birrell

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Determining Graduation Rates in Engineering for Community College Transfer Students Using Data Mining, Marcia Laugerman, Diane T. Rover, Mack C. Shelley, and Steven K. Mickelson

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Application of Quality Management Systems to Grain Handling: An Inventory Management Case Study, Chad M. Laux, Gretchen A. Mosher, and Charles R. Hurburgh Jr.

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Cellular, particle and environmental parameters influencing attachment in surface waters: a review, Chunyu Liao, Xiao Liang, Michelle L. Soupir, and Laura R. Jarboe

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Fluorescent Nanoparticles from Several Commercial Beverages: Their Properties and Potential Application for Bioimaging, Han Liao, Chengkun Jiang, Wenqiang Liu, Juan Manuel Vera, Oscar David Seni, Kevin Demera, Chenxu Yu, and Mingquan Tan

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Performance of an Infrared Photoacoustic Single Gas Analyzer in Measuring Ammonia from Poultry Houses, Hong Li, Chen Zhang, and Hongwei Xin

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Comparing Nitrate Sink Strength in Perennial Filter Strips at Toeslopes of Cropland Watersheds, David C. Mitchell, Xiaobo Zhou, Timothy B. Parkin, Matthew J. Helmers, and Michael J. Castellano

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Perceptions of Agricultural College Students on the Relationship between Quality and Safety in Agricultural Work Environments, Sai K. Ramaswamy and Gretchen A. Mosher

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Characterizing the Smell of Marijuana by Odor Impact of Volatile Compounds: An Application of Simultaneous Chemical and Sensory Analysis, Somchai Rice and Jacek A. Koziel

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Odor impact of volatiles emitted from marijuana, cocaine, heroin and their surrogate scents, Somchai Rice and Jacek A. Koziel

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Production and Use of Evolving Corn-Based Fuel Ethanol Coproducts in the U.S., Kurt A. Rosentrater

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Influence of quinoa roasting on sensory and physicochemical properties of allergen-free, gluten-free cakes, Jeffrey Rothschild, Kurt A. Rosentrater, Charles Onwulata, Mukti Signh, Lorena Menutti, Pera Jambazian, and Marie B. Omary

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Root responses of Jerusalem artichoke genotypes to different water regimes, Ruttanachira Ruttanaprasert, Sanun Jogloy, Nimitr Vorasoot, Thawan Kesmala, Rameshwar S. Kanwar, Carl C. Holbrook, and Aran Patanothai

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Contextual motivation in physical activity by means of association rule mining, Sugam Sharma, Udoyara Sunday Tim, Marinelle Payton, Hari Cohly, Shashi Gadia, Johnny Wong, and Sudharshanam Karakala

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Environmental assessment of three egg production systems—Part II. Ammonia, greenhouse gas, and particulate matter emissions, Timothy A. Shepherd, Yang Zhao, Hong Li, John P. Stinn, Morgan D. Hayes, and Hongwei Xin

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Corn stover harvest increases herbicide movement to subsurface drains – Root Zone Water Quality Model simulations, Martin J. Shipitalo, Robert W. Malone, Liwang Ma, Rameshwar S. Kanwar, Dale L. Shaner, and Carl H. Pederson

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Agricultural Conservation Planning Framework: 1. Developing Multipractice Watershed Planning Scenarios and Assessing Nutrient Reduction Potential, Mark D. Tomer, S. A. Porter, K. M. B. Boomer, D. E. James, J. A. Kostel, Matthew J. Helmers, Thomas M. Isenhart, and E. McLellan

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An Evaluation of the Physicochemical and Biological Characteristics of Foaming Swine Manure, Mark B. Van Weelden, Daniel S. Andersen, Steven L. Trabue, Brian J. Kerr, Kurt A. Rosentrater, and Laura M. Pepple

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Overview of 2015 International Symposium on Animal Environment and Welfare held in Chongqing, China, Chaoyuan Wang, Wen Liu, Baoming Li, and Hongwei Xin

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Laboratory-Scale Fractionation of Distillers Dried Grains with Solubles (DDGS), Congmu Zhang, Kun Xie, Ming-Hsun Cheng, and Kurt A. Rosentrater

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Odor and Odorous Chemical Emissions from Animal Buildings: Part 5. Simultaneous Chemical and Sensory Analysis with Gas Chromatography-Mass Spectrometry-Olfactometry, Shicheng Zhang, Jacek A. Koziel, Lingshuang Cai, Steven J. Hoff, Katie Y. Heathcote, Lijun Chen, Larry D. Jacobson, Neslihan Akdeniz, Brian P. Hetchler, David B. Parker, Edward A. Caraway, Albert J. Heber, and Sarah D. Bereznicki

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Environmental assessment of three egg production systems—Part I: Monitoring system and indoor air quality, Yang Zhao, Timothy A. Shepherd, Hong Li, and Hongwei Xin

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Comparative evaluation of three egg production systems: Housing characteristics and management practices, Yang Zhao, Timothy A. Shepherd, J. C. Swanson, J. A. Mench, D. M. Karcher, and Hongwei Xin

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Определение фенола в почвах с использованием твердофазной микроэкстракции, газовой хромато-масс-спектрометрии и метода добавок, С. С. Егемова, М. A. Дербисалин., Б. Н. Кенесов, and J. A. Koziel

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Определение фенола в почвах с использованием твердофазной микроэкстракции, газовой хромато-масс- спектрометрии и метода добавок, С. С. Егемова, М. А. Дербисалин, Б. Н. Кенесов, and Я. А. Козиел