Sequencing and distribution analysis of Dissociation transposon events throughout the Zea mays genome

Thumbnail Image
Date
2007-01-01
Authors
Schares, Justin
Major Professor
Advisor
Erik Vollbrecht
Committee Member
Journal Title
Journal ISSN
Volume Title
Publisher
Altmetrics
Authors
Research Projects
Organizational Units
Journal Issue
Is Version Of
Versions
Series
Department
Theses & dissertations (Interdisciplinary)
Abstract

The transposon Dissociation is a nonautonomous element derived from Activator. The Ac/Ds project, a collaborative effort to cast stable Ds insertions throughout the maize genome, is a valuable tool for generating a reverse genetics resource. By using Ac::immobilized, an Ac element that cannot mobilize but can produce transposase, a Ds element in the anthocyanin regulating allele r1-sc:m3 can be mobilized. As of October 5th, 2007, 816 unlinked and 126 linked families have been produced and sequenced, with a 77% success rate. Repeat masking shows a low content of repetitive sequence, implying that these events in genic regions. By examining transposition events into the donor chromosome, transposition patterns can be observed. 95% of hits land within 40 cM of the donor site. Because the Ac/Ds project uses the W22 inbred line, sequence from large fDs fragments was compared against GSS assemblies from B73. The identity between B73 and W22 is 96.5%.

Comments
Description
Keywords
Citation
Source
Subject Categories
Copyright
Mon Jan 01 00:00:00 UTC 2007