Follow

Submissions from 2017

PDF

Optimization of SAMtools sorting using OpenMP tasks, Nathan T. Weeks and Glenn R. Luecke

Submissions from 2016

PDF

Identification of Highly Variable Supernumerary Chromosome Segments in an Asexual Pathogen, Xiaoqiu Huang, Anindya Das, Binod B. Sahu, Subodh K. Srivastava, Leonor F. S. Leandro, Kerry O'Donnell, and Madan K. Bhattacharyya

Submissions from 2015

Link

Boa: Ultra-large-scale software repository and source-code mining, Robert Dyer, Hoan Anh Nguyen, Hridesh Rajan, and Tien N. Nguyen

Submissions from 2014

PDF

Horizontal transfer generates genetic variation in an asexual pathogen, Xiaoqiu Huang

PDF

The Genome Sequence of the Fungal Pathogen Fusarium virguliforme That Causes Sudden Death Syndrome in Soybean, Subodh K. Srivastava; Xiaoqiu Huang; Hargeet K. Brar; Ahmad M. Fakhoury; and Burton H, Bluhm

PDF

RNABindRPlus: A Predictor that Combines Machine Learning and Sequence Homology-Based Methods to Improve the Reliability of Predicted RNA-Binding Residues in Proteins, Rasna R. Walia, Li C. Xue, Katherine E. Wilkins, Yasser El-Manzalawy, Drena L. Dobbs, and Vasant G. Honavar

Submissions from 2013

PDF

Language Features for Software Evolution and Aspect-Oriented Interfaces: An Exploratory Study, Robert Dyer, Hridesh Rajan, and Yuanfang Cai

PDF

A Genome-Wide Survey of Highly Expressed Non-Coding RNAs and Biological Validation of Selected Candidates in Agrobacterium tumefaciens, Keunsub Lee, Xiaoqiu Huang, Chichun Yang, Danny Lee, Kan Nobuta, Jian-Bing Fan, and Kan Wang

Submissions from 2012

PDF

Frances: A Tool for Understanding Computer Architecture and Assembly Language, Tyler Sondag, Kian L. Pokorny, and Hridesh Rajan

Submissions from 2010

PDF

Supporting dynamic aspect-oriented features, Hridesh Rajan and Robert Dyer

PDF

Modular aspect-oriented design with XPIs, Kevin Sullivan, Wiilliam G. Griswold, Hridesh Rajan, Yuanyuan Song, Yuanfang Cai, Macneil Shonle, and Nishit Tewari

PDF

Detection of gene orthology from gene co-expression and protein interaction networks, Fadi George Towfic, Susan R. VanderPlas, Casey A. Oiver, Oliver Couture, Christopher K. Tuggle, M. Heather West Greenlee, and Vasant Honavar

Submissions from 2006

PDF

Modular software design with crosscutting interfaces, W. G. Griswold, M. Shonle, K. Sullivan, Y. Song, N. Tewari, Y. Cai, and Hridesh Rajan

PDF

Evolution of Alternative Splicing after Gene Duplication, Zhixi Su, Jianmin Wang, Xiaoqiu Huang, and Xun Gu

Submissions from 1999

PDF

CAP3: A DNA Sequence Assembly Program, Xiaoqiu Huang and Anup Madan

Submissions from 1996

PDF

Methods for Comparing a DNA Sequence with a Protein Sequence, Xiaoqiu Huang and Jinghui Zhang