Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation
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The Department of Ecology, Evolution, and Organismal Biology seeks to teach the studies of ecology (organisms and their environment), evolutionary theory (the origin and interrelationships of organisms), and organismal biology (the structure, function, and biodiversity of organisms). In doing this, it offers several majors which are codirected with other departments, including biology, genetics, and environmental sciences.
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The Department of Ecology, Evolution, and Organismal Biology was founded in 2003 as a merger of the Department of Botany, the Department of Microbiology, and the Department of Zoology and Genetics.
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2003–present
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- College of Agriculture and Life Sciences (parent college)
- College of Liberal Arts and Sciences (parent college)
- Department of Botany (predecessor, 2003)
- Department of Microbiology (predecessor, 2003)
- Department of Zoology and Genetics (predecessor, 2003)
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Abstract
- Cotton cultivars have evolved to produce extensive, long, seed-born fibers important for the textile industry, but we know little about the molecular mechanism underlying spinnable fiber formation. Here, we report how PACLOBUTRAZOL RESISTANCE 1 (PRE1) in cotton, which encodes a basic helix-loop-helix (bHLH) transcription factor, is a target gene of spinnable fiber evolution.
- Differential expression of homoeologous genes in polyploids is thought to be important to plant adaptation and novel phenotypes. PRE1 expression is specific to cotton fiber cells, upregulated during their rapid elongation stage and A-homoeologous biased in allotetraploid cultivars. Transgenic studies demonstrated that PRE1 is a positive regulator of fiber elongation.
- We determined that the natural variation of the canonical TATA-box, a regulatory element commonly found in many eukaryotic core promoters, is necessary for subgenome-biased PRE1 expression, representing a mechanism underlying the selection of homoeologous genes.
- Thus, variations in the promoter of the cell elongation regulator gene PRE1 have contributed to spinnable fiber formation in cotton. Overexpression of GhPRE1 in transgenic cotton yields longer fibers with improved quality parameters, indicating that this bHLH gene is useful for improving cotton fiber quality.
Comments
This article is published as Zhao, B., Cao, J.-F., Hu, G.-J., Chen, Z.-W., Wang, L.-Y., Shangguan, X.-X., Wang, L.-J., Mao, Y.-B., Zhang, T.-Z., Wendel, J. F. and Chen, X.-Y. (2018), Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation. New Phytol. doi: 10.1111/nph.15063. Posted with permission.