Campus Units

Computer Science, Genetics, Development and Cell Biology

Document Type

Conference Proceeding

Conference

20th IEEE International Requirements Engineering Conference (RE)

Publication Version

Accepted Manuscript

Publication Date

2012

Journal or Book Title

Proceedings of the 2012 20th IEEE International Requirements Engineering Conference (RE)

First Page

211

Last Page

220

DOI

10.1109/RE.2012.6345806

Conference Title

20th IEEE International Requirements Engineering Conference (RE)

Conference Date

September 24-28, 2012

City

Chicago, Illinois, USA

Abstract

DNA nanotechnology uses the information processing capabilities of nucleic acids to design self-assembling, programmable structures and devices at the nanoscale. Devices developed to date have been programmed to implement logic circuits and neural networks, capture or release specific molecules, and traverse molecular tracks and mazes. Here we investigate the use of requirements engineering methods to make DNA nanotechnology more productive, predictable, and safe. We use goal-oriented requirements modeling to identify, specify, and analyze a product family of DNA nanodevices, and we use PRISM model checking to verify both common properties across the family and properties that are specific to individual products. Challenges to doing requirements engineering in this domain include the error-prone nature of nanodevices carrying out their tasks in the probabilistic world of chemical kinetics, the fact that roughly a nanomole (a 1 followed by 14 0s) of devices are typically deployed at once, and the difficulty of specifying and achieving modularity in a realm where devices have many opportunities to interfere with each other. Nevertheless, our results show that requirements engineering is useful in DNA nanotechnology and that leveraging the similarities among nanodevices in the product family improves the modeling and analysis by supporting reuse.

Comments

This is a proceeding from 20th IEEE International Requirements Engineering Conference (RE) (2012): 211, doi: 10.1109/RE.2012.6345806. Posted with permission.

Rights

© 2012 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.

Copyright Owner

IEEE

Language

en

File Format

application/pdf

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