Summary and Implications
The objectives of this study were to compare the performance of different haplotype reconstruction approaches, characterize haplotype diversity and identify recombination hotspots on chromosomes 5 and 15 in layer chicken. BEAGLE, DAGPHASE, and fastPHASE software recognized fewer haplotypes than two other methods. In total, 10 and 2 recombination hotspots were identified on chromosomes 5 and 15, respectively. Further study is needed to confirm these regions with high recombination rate and high haplotype diversity.
Iowa State University
Weng, Ziqing; Wolc, Anna; Arango, Jesus; Settar, Petek; Fulton, Janet E.; O'Sullivan, Neil P.; Fernando, Rohan L.; Dekkers, Jack C. M.; and Garrick, Dorian J.
"Estimation of Haplotype Diversity and Recombination Rate on Chromosomes 5 and 15 in Layer Chickens,"
Animal Industry Report:
AS 661, ASL R3001.
Available at: https://lib.dr.iastate.edu/ans_air/vol661/iss1/64