The Avian RNAseq Consortium: a community effort to annotate the chicken genome

Thumbnail Image
Date
2014-12-12
Authors
Smith, Jacqueline
Burt, David
Lamont, Susan
Avian RNAseq Consortium
Major Professor
Advisor
Committee Member
Journal Title
Journal ISSN
Volume Title
Publisher
Authors
Person
Lamont, Susan
Distinguished Professor
Research Projects
Organizational Units
Organizational Unit
Journal Issue
Is Version Of
Versions
Series
Department
Animal Science
Abstract

Here we describe how members of the chicken research community have come together as the “Avian RNAseq Consortium” to provide chicken RNAseq data with a view to improving the annotation of the chicken genome. The data was used by Ensembl in their release 71 gene_build to help provide the most up-to-date annotation of Galgal4, which is still in current use. The data has also been used to predict many ncRNAs, particularly lncRNAs, and it continues to be used as a resource for annotation of other avian genomes along with continued gene discovery in the chicken. This article is submitted as part of the Third Report on Chicken Genes and Chromosomes which will be published in Cytogenetic and Genome Research.

Comments

This is a pre-print of the article Smith, Jacqueline, David W. Burt, Susan J. Lamont, and Avian RNAseq Consortium. "The Avian RNAseq Consortium: a community effort to annotate the chicken genome." bioRxiv (2014): 012559. DOI: 10.1101/012559. Posted with permission.

Description
Keywords
Citation
DOI
Copyright
Wed Jan 01 00:00:00 UTC 2014
Collections