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Submissions from 2017

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Comparative omega-3 fatty acid enrichment of egg yolks from first-cycle laying hens fed flaxseed oil or ground flaxseed, I. J. Ehr, M. E. Persia, and E. A. Bobeck

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Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure, Damarius S. Fleming, Steffen Weigend, Henner Simianer, Annett Weigend, Max Rothschild, Carl Schmidt, Chris Ashwell, Mike Persia, James Reecy, and Susan J. Lamont

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An economic analysis of sow retention in a United States breed-to-wean system, Tasha R. Gruhot, Julia A. Calderón Díaz, Tom J. Baas, Kevin C. Dhuyvetter, Lee L. Schulz, and Kenneth J. Stalder

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Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis), Daniela Iamartino, Ezequiel L. Nicolazzi, Curtis P. Van Tassell, James M. Reecy, Eric R. Fritz-Waters, James E. Koltes, Stefano Biffani, Tad S. Sonstegard, Steven G. Schroeder, Paolo Ajmone-Marsan, Riccardo Negrini, Rolando Pasquariello, Paola Ramell, Angelo Coletta, Jose F. Garcia, Ahmad Ali, Luigi Ramunno, Gianfranco Cosenza, Denise A. A. de Oliveira, Marcela G. Drummond, Eduardo Bastianetto, Alessandro Davassi, Ali Pirani, Fiona Brew, and John L. Williams

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Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection, Arun Kommadath, Hua Bao, Igseo Choi, James M. Reecy, James E. Koltes, Elyn Fritz-Waters, Chris J. Eisley, Jason R. Grant, Robert R. R. Rowland, Christopher K. Tuggle, Jack C. M. Dekkers, Joan K. Lunney, Le Luo Guan, Paul Stothard, and Graham S. Plastow

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Biphasic Metabolism and Host Interaction of a Chlamydial Symbiont, Lena König, Alexander Siegl, Thomas Penz, Susanne Haider, Cecilia Wentrup, Julia Polzin, Evelyne Mann, Stephan Schmitz-Esser, Daryl Domman, and Matthias Horn

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Evaluation of responses to vaccination of Angus cattle for four viruses that contribute to bovine respiratory disease complex, L. M. Kramer, M. S. Mayes, E. Fritz-Waters, J. L. Williams, E. D. Downey, R. G. Tait Jr., A. Woolums, C. Chase, and J. M. Reecy

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Transcriptome Sequencing Reveals Novel Candidate Genes for Cardinium hertigii-Caused Cytoplasmic Incompatibility and Host-Cell Interaction, Evelyn Mann, Corinne M. Stouthamer, Suzanne E. Kelly, Monika Dzieciol, Martha S. Hunter, and Stephan Schmitz-Esser

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Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle, Raluca G. Mateescu, Dorian J. Garrick, and James M. Reecy

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Precision Medicine in Cats: Novel Niemann-Pick Type C1 Diagnosed by Whole-Genome Sequencing, D. A. Mauler, B. Gandolfi, C. R. Reinero, D. P. O'Brien, J. L. Spooner, L. A. Lyons, N. Matthew Ellinwood, Max F. Rothschild, and 99 Lives Consortium

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Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses, George Msalya, Eui-Soo Kim, Emmanuel L. K. Laisser, Maulilio J. Kipanyula, Erson D. Karimuribo, Lughano J. M. Kusiluka, Sebastian W. Chenyambuga, and Max F. Rothschild

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Genomic footprints of dryland stress adaptation in Egyptian fat-tail sheep and their divergence from East African and western Asia cohorts, Joram M. Mwacharo, Eui-Soo Kim, Ahmed R. Elbeltagy, Adel M. Aboul-Naga, Barbara A. Rischkowsky, and Max F. Rothschild

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Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis nigripes), Annie Oh, Jacqueline W. Pearce, Barbara Gandolfi, Erica K. Creighton, William K. Suedmeyer, Michael Selig, Ann P. Bosiack, Leilani J. Castaner, Rebecca E. H. Whiting, Ellen B. Belknap, Leslie A. Lyons, N. Matthew Ellinwood, Dorian J. Garrick, Max F. Rothschild, and 99 Lives Consortium

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A systematic review and meta-analysis of tenderness metrics in control groups used in comparative nutrition experiments, M. J. Powell, C. Yuan, R. S. Dzikamunhenga, R. Tarté, E. Huff-Lonergan, S. M. Lonergan, and A. M. O'Connor

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A Hypothesis and Review of the Relationship between Selection for Improved Production Efficiency, Coping Behavior, and Domestication, Wendy M. Rauw, Anna K. Johnson, Luis Gomez-Raya, and Jack C. M. Dekkers

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Effects of Diet and Genetics on Growth Performance of Pigs in Response to Repeated Exposure to Heat Stress, Wendy M. Rauw, E. Johana Mayorga, Soi Meng Lei, Jack C. M. Dekkers, John F. Patience, Nicholas K. Gabler, Steven M. Lonergan, and Lance H. Baumgard

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Review: Effects of Ractopamine Hydrochloride (Paylean) on welfare indicators for market weight pigs, M. J. Ritter, A. K. Johnson, M. E. Benjamin, S. N. Carr, M. Ellis, L. Faucitano, T. Grandin, J. L. Salak-Johnson, D. U. Thomson, C. Goldhawk, and M. S. Calvo-Lorenzo

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Physiological mechanisms through which heat stress compromises reproduction in pigs, Jason W. Ross, Benjamin J. Hale, Jacob T. Seibert, Matthew R. Romoser, Malavika K. Adur, Aileen F. Keating, and Lance H. Baumgard

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Comparative genomics of human and non-human Listeria monocytogenes sequence type 121 strains, Kathrin Rychli, Eva M. Wagner, Luminita Ciolacu, Andreas Zaiser, Taurai Tasara, Martin Wagner, and Stephan Schmitz-Esser

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Genetic parameters and expected responses to selection for components of feed efficiency in a Duroc pig line, Juan P. Sánchez, Mohamed Ragab, Raquel Quintanilla, Max F. Rothschild, and Miriam Piles

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Intestinal microbiota profiles associated with low and high residual feed intake in chickens across two geographical locations, Sina-Catherine Siegerstetter, Stephan Schmitz-Esser, Elizabeth Magowan, Stefanie Urimare Wetzels, Qendrim Zebeli, Peadar G. Lawlor, Niamh E. O'Connell, and Barbara U. Metzler-Zebeli

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Development of an Objective Feet and Leg Conformation Evaluation Method Using Digital Imagery in Swine, J. D. Stock, J. A. Calderón Díaz, C. E. Abell, T. J. Baas, M. F. Rothschild, B. E. Mote, and K. J. Stalder

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Prolapse Incidence in Swine Breeding Herds Is a Cause for Concern, China Supakorn, Joseph D. Stock, Chris Hostetler, and Kenneth J. Stalder

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Genomic Analysis Suggests KITLG is Responsible for a Roan Pattern in two Pakistani Goat Breeds, Andrea Talenti, Francesca Bertolini, Jamie Williams, Muhammad Moaeen-ud-Din, Stefano Frattini, Beatrice Coizet, Giulio Pagnacco, James Reecy, Max F. Rothschild, Paola Crepaldi, and Italian Goat Consortium

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Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat, Angelica Van Goor, Chris M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Identification of genome-wide SNP-SNP interactions associated with important traits in chicken, Hui Zhang, Jia-Qiang Yu, Li-Li Yang, Luke M. Kramer, Xin-Yang Zhang, Wei Na, James M. Reecy, and Hui Li

Submissions from 2016

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Genetic relationship between purebred and crossbred sow longevity, C. E. Abell, R. L. Fernando, T. V. Serenius, M. F. Rothschild, K. A. Gray, and K. J. Stalder

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Effect of Oregano Essential Oil (Origanum vulgare subsp. hirtum) on the Storage Stability and Quality Parameters of Ground Chicken Breast Meat, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Effects of Tannic Acid on Lipid and Protein Oxidation, Color, and Volatiles of Raw and Cooked Chicken Breast Meat during Storage, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Large-scale gene co-expression network as a source of functional annotation for cattle genes, Hamid Beiki, Ardeshir Nejati-Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, and James M. Reecy

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Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle, Justin W. Buchanan, James M. Reecy, Dorian J. Garrick, Qing Duan, Donald C. Beitz, James E. Koltes, Mahdi Saatchi, Lars Koesterke, and Raluca G. Mateescu

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Rubber mat placement in a farrowing and lactation facility: tips and techniques, Magnus Campler, Monique Pairis-Garcia, Kenneth J. Stalder, and Anna K. Johnson

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Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content, Aline S. M. Cesar, Luciana C. A. Regitano, Mirele D. Poleti, Sónia C. S. Andrade, Polyana C. Tizioto, Priscila S. N. Oliveira, Andrezza M. Felício, Michele L. do Nascimento, Amália S. Chaves, Dante P. D. Lanna, Rymer R. Tullio, Renata T. Nassu, James E. Koltes, Eric Frtiz-Waters, Gerson B. Mourão, Adhemar Zerlotini-Neto, James M. Reecy, and Luiz L. Coutinho

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Ovarian follicular dynamics in purebred and crossbred Boran cows in Ethiopia, Tamrat Degefa, Alemayehu Lemma, Jeilu Jemal, Gbremeskel Mamo, Azage Tegegne, and Curtis R. Youngs

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Epimural Indicator Phylotypes of Transiently-Induced Subacute Ruminal Acidosis in Dairy Cattle, Stephan Schmitz Esser, Stefanie U. Wetzels, Evelyne Mann, Barbara U. Metzel-Zebeli, Poulad Pourazad, Muhammad Qumar, Fenja Klevenhusen, Beate Pinior, Martin Wagner, and Qendrim Zebeli

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Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences, D. S. Fleming, J. E. Koltes, E. R. Fritz-Waters, M. F. Rothschild, C. J. Schmidt, C. M. Ashwell, M. E. Persia, J. M. Reecy, and S. J. Lamont

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Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array, D. S. Fleming, J. E. Koltes, A. D. Markey, C. J. Schmidt, C. M. Ashwell, M. F. Rothschild, M. E. Persia, J. M. Reecy, and S. J. Lamont

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Comparison of host genetic factors influencing pig response to infection with two North American isolates of porcine reproductive and respiratory syndrome virus, Andrew S. Hess, Zeenath Islam, Melanie K. Hess, Raymond R. R. Rowland, Joan Lunney, Andrea Doeschl-Wilson, Graham S. Plastow, and Jack C. M. Dekkers

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Developmental progress and current status of the Animal QTLdb, Zhi-Liang Hu, Carissa A. Park, and James M. Reecy

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Antioxidant Effect of Extracts from the Coffee Residue in Raw and Cooked Meat, Ji-Hee Kim, Dong Uk Ahn, Jong Bang Eun, and Sun Hee Moon

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Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle, Luke M. Kramer, M. A. Abdel Ghaffar, J. E. Koltes, E. R. Fritz-Waters, M. S. Mayes, A. D. Sewell, N. T. Weeks, D. J. Garrick, R. L. Fernando, L. Ma, and J. M. Reecy

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The effect of antiseptic compounds on umbilical cord healing in piglets in a commercial facility, Amanda L. Robinson, Jessie D. Colpoys, Glenn D. Robinson, Elizabeth A. Hines, Leo L. Timms, Erika M. Edwards, Ken J. Stalder, Anna K. Johnson, and Howard D. Tyler

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How do sow postures change when lameness is induced using a chemical synovitis model?, A. Roca, A. K. Johnson, L. A. Karriker, L. L. Timms, C. E. Abell, and K. J. Stalder

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Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL, Martine Schroyen, Christopher Eisley, James E. Koltes, Eric Fritz-Waters, Igseo Choi, Graham S. Plastow, Leluo Guan, Paul Stothard, Hua Bao, Arun Kommadath, James M. Reecy, Joan K. Lunney, Robert R. R. Rowland, Jack C. M. Dekkers, and Christopher K. Tuggle

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Litter-of-origin trait effects on gilt development, J. L. Vallet, J. A. Calderón-Díaz, K. J. Stalder, C. Phillips, R. A. Cushman, J. R. Miles, L. A. Rempel, G. A. Rohrer, C. A. Lents, B. A. Freking, and D. J. Nonneman

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Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress, Angelica Van Goor, Christopher M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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High-performance epistasis detection in quantitative trait GWAS, Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, and James M. Reecy

Submissions from 2015

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Coordinated International Action to Accelerate Genome-to-Phenome with FAANG, the Functional Annotation of Animal Genomes Project, Leif Andersson, Alan Archibald, Cynthia D. Bottema, Rudiger Brauning, Shane D. Burgess, Dave W. Burt, Eduardo Casas, Hans H. Cheng, Laura Clarke, Christine Couldrey, Brian P. Dalrymple, Christine G. Elsik, Sylvain Foissac, Elisabett Giuffra, Martien A. M. Groenen, Ben J. Hayes, LuSheng S. Huang, Hassan Khatib, James W. Kijas, Heebal Kim, Joan K. Lunney, Fiona M. McCarthy, John C. McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S. Plastow, James M. Reecy, Gary A. Rohrer, Elena Sarropoulou, Carl J. Schmidt, Jeffrey Silverstein, Ross L. Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K. Tuggle, Johanna Vilkki, Stephen N. White, Shuhong Zhao, Huaijun Zhou, and The FAANG Consortium

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RAPTR-SV: A Hybrid Method for the Detection of Structural Variants, Derek M. Bickhart, Jana L. Hutchison, Lingyang Xu, Robert Schnabel, Jeremy F. Taylor, James M. Reecy, Steven Schroeder, Curt P. Van Tassell, Tad S. Sonstegard, and George E. Liu

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Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age, J. A. Calderón Díaz, J. L. Vallet, C. A. Lents, D. J. Nonneman, J. R. Miles, E. C. Wright, L. A. Rempel, R. A. Cushman, B. A. Freking, G. A. Rohrer, C. Phillips, A. DeDecker, G. Foxcroft, and K. Stalder

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Optimal dietary energy and amino acids for gilt development: Growth, body composition, feed intake, and carcass composition traits, J. A. Calderón Díaz, J. L. Vallet, T. J. Prince, C. E. Phillips, A. E. DeDecker, and K. J. Stalder

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Putative Regulatory Factors Associated with Intramuscular Fat Content, Aline A. M. Cesar, Luciana C. A. Regitano, James Eugene Koltes, Eric R. Fritz-Waters, Dante P. D. Lanna, Gustavo Gasparin, Gerson B. Mourão, Priscila S. N. Oliveira, James M. Reecy, and Luiz L. Coutinho

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Feed efficiency effects on barrow and gilt behavioral reactivity to novel stimuli tests, Jessica D. Colpoys, Caitlyn Abell, Nicholas K. Gabler, Aileen F. Keating, Suzanne T. Millman, Janice Siegford, Jennifer M. Young, and Anna Johnson

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Transcriptome Analysis of Post-Hatch Breast Muscle in Legacy and Modern Broiler Chickens Reveals Enrichment of Several Regulators of Myogenic Growth, Richard V. N. Davis, Susan J. Lamont, Max F. Rothschild, Michael E. Persia, Chris M. Ashwell, and Carl J. Schmidt

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Sire Breed Effect on Beef Longissimus Mineral Concentrations and Their Relationships with Carcass and Palatability Traits, Q. Duan, Richard G. Tait Jr., M. J. Schneider, Donald C. Beitz, Tommy L. Wheeler, S. D. Shackelford, Larry V. Cundiff, and James M. Reecy

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Association of Serum Antibody Levels Following Vaccination with A Modified Live BVDV Vaccine and Protection from Clinical Disease upon Challenge, Shollie M. Falkenberg, Julia Ridpath, Richard G. Tait Jr., Brian Lee Vander Ley, Fernando F. Bauermann, and James M. Reecy

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Phosphoramide mustard exposure induces DNA adduct formation and the DNA damage repair response in rat ovarian granulosa cells, Shanthi Ganesan and Aileen F. Keating

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Impact of obesity on 7,12-dimethylbenz[a]anthracene-induced altered ovarian connexin gap junction proteins in female mice, Shanthi Ganesan, Jackson Nteeba, and Aileen F. Keating

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Genetically Disparate Fayoumi Chicken Lines Show Different Response to Avian Necrotic Enteritis, Duk K. Kim, Hyun S. Lillehoj, Seung I. Jang, Sung H. Lee, Yeong H. Hong, and Susan J. Lamont

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Identification of signatures of selection for intramuscular fat and backfat thickness in two Duroc populations, Eui-Soo Kim, Roger Ros-Freixedes, Ramona N. Pena, Thomas J. Baas, Joan Estany, and Max F. Rothschild

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Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions, Eui-Soo Kim, Tad S. Sonstegard, and Max F. Rothschild

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The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection, Eui-Soo Kim, Tad S. Sonstegard, Curt P. Van Tassell, George Wiggans, and Max F. Rothschild

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Identification of a Putative Quantitative Trait Nucleotide in Guanylate Binding Protein 5 for Host Response to PRRS Virus Infection, James Eugene Koltes, Eric R. Fritz-Waters, Christopher J. Eisley, Igseo Choi, Hua Bao, Arun Kommadath, Nick V. L. Serão, Nicholas James Boddicker, Samuel M. Abrams, Martine Schroyen, Hyelee Park Loyd, Christopher K. Tuggle, Graham S. Plastow, LeLuo Guan, Paul Stothard, Joan K. Lunney, Peng Liu, Susan Carpenter, Raymond Rowland, Jack C. M. Dekkers, and James M. Reecy

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Transcriptional Profiling of PRKG2-Null Growth Plate Identifies Putative Down-Stream Targets of PRKG2, James Eugene Koltes, Dinesh Kumar, Ranjit S. Kataria, Vickie L. Cooper, and James M. Reecy

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Control of Listeria monocytogenes on Alternatively Cured Ready-to-Eat Ham Using Natural Antimicrobial Ingredients in Combination with Post- Lethality Interventions, N A Lavieri, J G Sebranek, J C Cordray, J S Dickson, A M Horsch, S Jung, D K Manu, A F Mendonca, and B Brehm-Stecher

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Genome-Wide DNA Methylome Variation in Two Genetically Distinct Chicken Lines Using MethylC-Seq, Jinxiu Li, Rujiao Li, Ying Wang, Xiaoxiang Hu, Yiqiang Zhao, Li LI, Chungang Feng, Xiaorong Gu, Fang Liang, Susan J. Lamont, Songnian Hu, Huaijun Zhou, and Ning Li

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Heat Stress Alters Ovarian Insulin-Mediated Phosphatidylinositol-3 Kinase and Steroidogenic Signaling in Gilt Ovaries, Jackson Nteeba, M. Victoria Sanz-Fernandez, Robert P. Rhoads, Lance H. Baumgard, Jason W. Ross, and Aileen F. Keating

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Pharmacokinetics of meloxicam in mature swine after intravenous andoral administration, Monique D. Pairis-Garcia, Anna Johnson, Butch Kukanich, Larry W. Wulf, Suzanne T. Millman, Kenneth J. Stalder, Locke A. Karriker, and Johann F. Coetzee

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Acute Heat Stress and Reduced Nutrient Intake Alter Intestinal Proteomic Profile and Gene Expression in Pigs, Sarah C. Pearce, Steven M. Lonergan, Elisabeth J. Huff-Lonergan, Lance H. Baumgard, and Nicholas K. Gabler

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Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: A comparison of pigs with different postweaning growth rates, C. M. Pilcher, C. K. Jones, M. Schroyen, A. J. Severin, J. F. Patience, C. K. Tuggle, and J. E. Koltes

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Effect of fenbendazole on shedding and embryonation of Ascaris suum eggs from naturally infected sows, Jeremy S. Pittman, Gil H. Myers, Kenneth J. Stalder, and Locke A. Karriker

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The effect of selection for residual feed intake on scale-activity and scale-exit scores in Yorkshire gilts, Larry J. Sadler, Anna Johnson, Dan Nettleton Dr., C. R. G. Lewis, J. M. Young, Steven M. Lonergan, and Jack C. Dekkers

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Third Report on Chicken Genes and Chromosomes 2015, M. Schmid, J. Smith, D. W. Burt, B. L. Aken, P. B. Antin, A. L. Archibald, C. Ashwell, P. J. Blackshear, C. Boschiero, C. T. Brown, S. C. Burgess, H. H. Cheng, W. Chow, D. J. Coble, A. Cooksey, R. P. M. A.. Crooijmans, J. Damas, R. V. N. Davis, D.-J. de Koning, M. E. Delany, T. Derrien, T. T. Desta, I. C Dunn, M. Dunn, H. Ellegren, L. Eöry, I. Erb, M. Farré, M. Fasold, D. Fleming, P. Flicek, K. E. Fowler, L. Frésard, D. P. Froman, V. Garceau, P. P. Gardner, A. A. Gheyas, D. K. Griffin, M. A. M. Groenen, T. Haaf, O. Hanotte, A. Hart, J. Häsler, S. B. Hedges, J. Hertel, K. Howe, A. Hubbard, D. A. Hume, P. Kaiser, D. Kedra, S. J. Kemp, C. Klopp, K. E. Kniel, R. Kuo, S. Lagarrigue, Susan J. Lamont, D. M. Larkin, R. A. Lawal, S. M. Markland, F. McCarthy, H. A. McCormack, M. C. McPherson, A. Motegi, S. A. Muljo, A. Münsterberg, R. Nag, I. Nanda, M. Neuberger, A. Nitsche, C. Notredame, H. Noyes, R. O'Connor, E. A. O'Hare, A. J. Oler, S. C. Ommeh, H. Pais, M. Persia, F. Pitel, L. Preeyanon, P. Prieto Barja, E. M. Pritchett, D. D. Rhoads, C. M. Robinson, M. N. Romanov, M. Rothschild, P.-F. Roux, C. J. Schmidt, A.-S. Schneider, M. G. Schwartz, S. M. Searle, M. A. Skinner, C. A. Smith, P. F. Stadler, T. E. Steeves, C. Steinlein, L. Sun, M. Takata, I. Ulitsky, Q. Wang, Y. Wang, W. C. Warren, J. M. D. Wood, D. Wragg, and H. Zhou

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Whole Blood Microarray Analysis of Pigs Showing Extreme Phenotypes after a Porcine Reproductive and Respiratory Syndrome Virus Infection, Martine Schroyen, Juan Pedro Steibel, James Eugene Koltes, Igseo Choi, Nancy E. Raney, Christopher J. Eisley, Eric R. Fritz-Waters, James M. Reecy, Jack C. M. Dekkers, Robert R. R. Rowland, Joan K. Lunney, Catherine W. Ernst, and Christopher K. Tuggle

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Nitrate, Nitrite, and Cured Versus Uncured Meats, Joseph G. Sebranek

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The BioMart Community Portal: An Innovative Alternative to Large, Centralized Data Repositories, Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James Allen, Olivier Arnaiz, Mohammad Hamza Awedh, Richard Baldock, Giulia Barbiera, Philippe Bardou, Tim Beck, Andrew Blake, Meredith Bonierbale, Anthony J. Brookes, Gabrielle Bucci, Iwan Bueti, Sarah Burge, Cédric Cabua, Joseph W. Carlson, Claude Chelala, Charalambos Chrysostomou, Davide Citaro, Olivier Collin, Raul Cordova, Rosalind J. Cutts, Erik Dassi, Alex Di Genova, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras, Julia Fernandez-Banet, Simon Forbes, Robert C. Free, Takamoto Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David Goodstein, Kristian Gray, José Alfonso Guerra-Assunção, Bernard Haggarty, Dong-Jin Han, Byung Woo Han, Todd Harris, Jayson Harshbarger, Robert K. Hastings, Richard D. Hayes, Claire Hoede, Shen Hu, Zhi-Liang Hu, Lucie Hutchins, Zhengyan Kan, Hideya Kawaji, Aminah Keliet, Arnaud Kerhornou, Sunghoon Kim, Rhoda Kinsella, Christophe Klopp, Lei Kong, Daniel Lawson, Dejan Lazarevic, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Lio, Chu-Jun Liu, Jie Luo, Alejandro Maass, Jerome Mariette, Thomas Maurel, Stefania Merella, Azza Mostafa Mohamed, Francois Moreews, Ibounyamine Nabihoudine, Nelson Ndegwa, Céline Noirot, Cristian Perez-Llamas, Michael Primig, Alessandro Quattrone, Hasi Quesneville, Davide Rambaldi, James M. Reecy, Michela Riba, Steven Rosanoff, Amna Ali Saddiq, Elise Salas, Olivier Sallou, Rebecca Shepherd, Reinhard Simon, Linda Sperling, William Spooner, Daniel M. Staines, Delphine Steinbach, Kevin Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa, Shi-Jian Zhang, and Arek Kasprzyk

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Avian Pathogenic Escherichia coli (APEC) Infection Alters Bone Marrow Transcriptome in Chickens, Hongyan Sun, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Novel Pathways Revealed in Bursa of Fabricius Transcriptome in Response to Extraintestinal Pathogenic Escherichia coli (ExPEC) Infection, Hongyan Sun, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line, Liang Sun, Susan J. Lamont, Amanda M. Cooksey, Fiona M. McCarthy, Catalina O. Tudor, K. Vijay-Shanker, Rachael M. DeRita, Max F. Rothschild, Chris M. Ashwell, Michael E. Persia, and Carl J. Schmidt

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Detection of Quantitative Trait Loci for Mineral Content of Nelore Longissimus Dorsi Muscle, Polyana C. Tizioto, Jeremy F. Taylor, Jared E. Decker, Caio F. Gromboni, Maurício A. Mudadu, Robert Schnabel, Luiz L. Coutinho, Gerson B. Mourão, Priscila S. N. Oliveira, Marcela M. Souza, James M. Reecy, Renata T. Nassu, Flavia A. Bressani, Patricia Tholon, Tad S. Sonstegard, Maurício M. Alencar, Rymer R. Tullio, Ana R. A. Nogueira, and Luciana C. A. Regitano

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Identification of quantitative trait loci for body temperature, body weight, breast yield, and digestibility in an advanced intercross line of chickens under heat stress, Angelica Van Goor, Kevin J. Bolek, Chris M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Response and Inbreeding from a Genomic Selection Experiment in Layer Chickens, Anna Wolc, Honghua Zhao, Jesus Arango, Petek Settar, Janet E. Fulton, Neil P. O'Sullivan, Rudolf Preisinger, Christine Stricker, David Habier, Rohan L. Fernando, Dorian J. Garrick, Susan J. Lamont, and Jack C. Dekkers

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Gene Co-Expression Network Analysis Provides Novel Insights into Myostatin Regulation at Three Different Mouse Developmental Timepoints, Xuerong Yang, James Eugene Koltes, Carissa A. Park, Daiwen Chen, and James M. Reecy

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RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies, Zhu Zhuo, Susan J. Lamont, Willaim R. Lee, and Behnam Abasht

Submissions from 2014

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Total cost estimation for implementing genome-enabled selection in a multi-level swine production system, Caitlyn E. Abell, Jack C. Dekkers, Max F. Rothschild, John W. Mabry, and Kenneth J. Stalder

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Using Classification Trees to Detect Induced Sow Lameness with a Transient Model, Caitlyn E. Abell, Anna K. Johnson, Locke A. Karriker, Max F. Rothschild, Steven J. Hoff, G. Sun, R. F. Fitzgerald, and Kenneth J. Stalder

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Evaluation of Variant Identification Methods for Whole Genome Sequencing Data in Dairy Cattle, Christine F. Baes, Marlies A. Dolezal, James Eugene Koltes, Beat Bapst, Eric R. Fritz-Waters, Sandra Jansen, Christine Flury, Heidi Signer-Hasler, Christine Stricker, Rohan L. Fernando, Ruedi Fries, Juerg Moll, Dorian J. Garrick, James M. Reecy, and Birgit Gredler

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Effects of xylanase supplementation of corn-soybean meal-dried distiller's grain diets on performance, metabolizable energy, and body composition when fed to first-cycle laying hens, E. A. Bobeck, N. A. Nachtrieb, A. B. Batal, and M. E. Persia

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Genome-Wide Association and Genomic Prediction for Host Response to Porcine Reproductive and Respiratory Syndrome Virus Infection, Nicholas James Boddicker, Angelica G. Bjorkquist, Raymond Rowland, Joan K. Lunney, James M. Reecy, and Jack C. Dekkers

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Validation and Further Characterization of a Major Quantitative Trait Locus Associated with Host Response to Experimental Infection with Porcine Reproductive and Respiratory Syndrome Virus, Nicholas James Boddicker, Dorian J. Garrick, Raymond Rowland, Joan K. Lunney, James M. Reecy, and Jack C. Dekkers

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Predicting Time Cattle Spend in Streams to Quantify Direct Deposition of Manure, Shannon B. Brown, Charles D. Ikenberry, Michelle L. Soupir, Justin J. Bisinger, and James R. Russell

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Survival of Methicillin-Resistant Staphylococcus aureus During Thermal Processing of Frankfurters, Summer Sausage, and Ham, Johnathan A. Campbell, James S. Dickson, Joseph C. Cordray, Dennis G. Olson, Aubrey F. Mendonca, and Kenneth J. Prusa

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Polymorphisms in Calpastatin and mu-Calpain Genes Are Associated with Beef Iron Content, E. Casas, Q. Duan, M. J. Schneider, S. D. Shackelford, Tommy L. Wheeler, Larry V. Cundiff, and James M. Reecy

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Genome-Wide Association Study for Intramuscular Fat Deposition and Composition in Nellore Cattle, Aline A. M. Cesar, Luciana C. A. Regitano, Gerson B. Mourão, Rymer R. Tullio, Dante P. D. Lanna, Renata T. Nassu, Mauricio A. Mudado, Priscila S. N. Oliveira, Michele L. do Nascimento, Amália S. Chaves, Maurício M. Alencar, Rad S. Sonstegard, Dorian J. Garrick, James M. Reecy, and Luiz L. Coutinho

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Increasing Gene Discovery and Coverage Using RNA-Seq of Globin RNA Reduced Porcine Blood Samples, Igseo Choi, Hua Bao, Arun Kommadath, Afshin Hosseini, Xu Sun, Yan Meng, Paul Stothard, Graham S. Plastow, Christopher K. Tuggle, James M. Reecy, Eric R. Fritz-Waters, Samuel M. Abrams, Joan K. Lunney, and LeLuo Guan

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RNA-Seq Analysis of Broiler Liver Transcriptome Reveals Novel Responses to High Ambient Temperature, Derrick Jamaal Coble, Damarius S. Fleming, Michael E. Persia, Chris M. Ashwell, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Effects of Genetic Selection for Residual Feed Intake on Behavioral Reactivity of Castrated Male Pigs to Novel Stimuli Tests, Jessica D. Colpoys, Caitlyn Abell, Jennifer M. Young, Aileen F. Keating, Nicholas K. Gabler, Suzanne T. Millman, Janice Siegford, and Anna K. Butters-Johnson

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Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle, Jared E. Decker, Stephanie D. McKay, Megan M. Rolf, JaeWoo Kim, Antonio Molina Alcalá, Tad S. Sonstegard, Olivier Hanotte, Anders Götherström, Christopher M. Seabury, Lisa Praharani, Masroor Ellahi Babar, Luciana Correia de Almeida Regitano, Mehmet Ali Yildiz, Michael P. Heaton, Wan-Sheng Liu, Chu-Zhao Lei, James M. Reecy, Muhammad Saif-ur-Rehman, Robert D. Schnabel, and Jeremy F. Taylor

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Impact of 7,12-dimethylbenz[a]anthracene exposure on connexin gap junction proteins in cultured rat ovaries, Shanthi Ganesan and Aileen F. Keating

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Enhanced susceptibility of ovaries from obese mice to 7,12-dimethylbenz[a]anthracene-induced DNA damage, Shanthi Ganesan, Jackson Nteeba, and Aileen F. Keating