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Submissions from 2018

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Determining the Time Required to Detect Induced Sow Lameness Using an Embedded Microcomputer-Based Force Plate System, Brady McNeil, Julia Calderón Díaz, Caitlyn Bruns, Joe Stock, Suzanne Millman, Anna Johnson, Locke Karriker, and Kenneth Stalder

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Immunomodulatory effects of heat stress and lipopolysaccharide on the bursal transcriptome in two distinct chicken lines, Melissa S. Monson, Angelica Van Goor, Christopher M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken, Gabriel Costa Monteiro Moreira, Clarissa Boschiero, Aline Silva Mello Cesar, James M. Reecy, Thaís Fernanda Godoy, Fábio Pértille, Mônica Corrêa Ledur, Ana Silvia Alves Meira Tavares Moura, Dorian J. Garrick, and Luiz Lehmann Coutinho

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A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens, Gabriel Costa Monteiro Moreira, Clarissa Boschiero, Aline Silva Mello Cesar, James M. Reecy, Thaís Fernanda Godoy, Priscila Anchieta Trevisoli, Maurício E. Cantão, Mônica Corrêa Ledur, Adriana Mércia Guaratini Ibelli, Jane de Oliveira Peixoto, Ana Silvia Alves Meira Tavares Moura, Dorian Garrick, and Luiz Lehmann Coutinho

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New Aspects on Listeria monocytogenes ST5-ECVI Predominance in a Heavily Contaminated Cheese Processing Environment, Meryem Muhterem-Uyar, Luminita Ciolacu, Karl-Heinz Wagner, Martin Wagner, Stephan Schmitz-Esser, and Beatrix Stessl

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Genetic diversity, breed composition and admixture of Kenyan domestic pigs, Fidalis Denis Mujibi, Edward Okoth, Evans K. Cheruiyot, Cynthia Onzere, Richard P. Bishop, Eric M. Fèvre, Lian Thomas, Charles Masembe, Graham Plastow, and Max Rothschild

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Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle, Gabriella B. Oliveira, Luciana C. A. Regitano, Aline S.M. Cesar, James M. Reecy, Karina Y. Degaki, Mirele D. Poleti, Andrezza M. Felício, James E. Koltes, and Luiz L. Coutinho

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Genome-wide association studies of inflammatory bowel disease in German shepherd dogs, Atiyeh Peiravan, Francesca Bertolini, Max Rothschild, Kenneth W. Simpson, Albert E. Jergens, Karin Allenspach, and Dirk Werling

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Use of Different Types and Amounts of Dietary Fats to Redesign Pork, Arlie D. Penner, Murray L. Kaplan, Lauren L. Christian, Kenneth J. Stalder, and Donald C. Beitz

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Autochthonous facility-specific microbiota dominates washed-rind Austrian hard cheese surfaces and its production environment, Narciso M. Quijada, Evelyne Mann, Martin Wagner, David Rodríguez-Lázaro, Marta Hernández, and Stephan Schmitz-Esser

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Association of Candidate Genes with Response to Heat and Newcastle Disease Virus, Kaylee Rowland, Perot Saelao, Ying Wang, Janet E. Fulton, Grant N. Liebe, Amy M. McCarron, Anna Wolc, Rodrigo A. Gallardo, Terra Kelly, Huaijun Zhou, Jack C. M. Dekkers, and Susan J. Lamont

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Genetic Analysis of a Commercial Egg Laying Line Challenged With Newcastle Disease Virus, Kaylee Rowland, Anna Wolc, Rodrigo A. Gallardo, Terra Kelly, Huaijun Zhou, Jack C. M. Dekkers, and Susan J. Lamont

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Integrated Proteomic and Transcriptomic Analysis of Differential Expression of Chicken Lung Tissue in Response to NDV Infection during Heat Stress, Perot Saelao, Ying Wang, Ganrea Chanthavixay, Vivian Yu, Rodrigo A. Gallardo, Jack C. M. Dekkers, Susan J. Lamont, Terra Kelly, and Huaijun Zhou

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Predicting aged pork quality using a portable Raman device, C. C. Santos; J. Zhao; X. Dong; S. M. Lonergan; E. Huff-Lonergan; A. Outhuse; K. B. Carlson; K. J. Prusa; C. A. Fedler; C. Yu; S. D, Shackelford; D. A. King; and T. L. Wheeler

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Transcriptional Innate Immune Response of the Developing Chicken Embryo to Newcastle Disease Virus Infection, Megan Ann Schilling, Robab Katani, Sahar Memari, Meredith Cavanaugh, Joram Buza, Jessica Radzio-Basu, Fulgence N. Mpenda, Melissa S. Deist, Susan J. Lamont, and Vivek Kapur

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Abundance and potential contribution of Gram-negative cheese rind bacteria from Austrian artisanal hard cheeses, Stephan Schmitz-Esser, Monika Dzieciol, Eva Nischler, Elisa Schornsteiner, Othmar Bereuter, Evelyne Mann, and Matin Wagner

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Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle, Somayeh Sharifi, Abbas Pakdel, Mansour Ebrahim, James M. Reecy, Samaneh Fazeli Farsani, and Esmaeil Ebrahimie

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AdaptMap: exploring goat diversity and adaptation, Alessandra Stella, Ezequiel Luis Nicolazzi, Curtis P. Van Tassell, Max F. Rothschild, Licia Colli, Benjamin D. Rosen, Tad S. Sonstegard, Paola Crepaldi, Gwenola Tosser-Klopp, Stephane Joost, Francesca Bertolini, Jim Reecy, and AdaptMap Consortium

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Lameness: a principle problem to sow longevity in breeding herds, China Supakorn, Joseph D. Stock, Eduardo Garay, Anna K. Johnson, and Kenneth J. Stalder

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Differential expression of intestinal nutrient transporters and host defense peptides in Eimeria maxima-infected Fayoumi and Ross chickens, Shengchen Su, Katarzyna B. Miska, Raymond H. Fetterer, Mark C. Jenkins, Susan J. Lamont, and Eric A. Wong

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Physiological responses to heat stress in two genetically distinct chicken inbred lines, Y. Wang, P. Saelao, K. Chanthavixay, R. Gallardo, D. Bunn, Susan J. Lamont, Jack C. M. Dekkers, T. Kelly, and H. Zhou

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Nursery pig behavior evaluation pre- and post injection using digital-image methodology, Shawna L. Weimer, Thomas J. Fangman, Locke A. Karriker, Kenneth J. Stalder, and Anna K. Johnson

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Distinct genes and pathways associated with transcriptome differences in early cardiac development between fast- and slow-growing broilers, Jibin Zhang, Carl J. Schmidt, and Susan J. Lamont

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Age-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose, Wenping Zhang, Wenbin Liu, Rong Hu, Liang Zhang, Stephan Schmitz-Esser, Huaibo Sun, Junjin Xie, Yunfei Zhang, Chengdong Wang, Lifeng Li, Bisong Yue, He Huang, Hairui Wang, Fujun Shen, and Zhihe Zhang

Submissions from 2017

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Risk factors for occurrence of displaced abomasum and their relation to nutritional management of Holstein dairy cattle, Behlul Behluli, Arben Musliu, Kurtesh Sherifi, Curtis R. Youngs, and Agim Rexhepi

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Seroprevalence and risk factors for Coxiella burnetii, the causative agent of Q fever in the dromedary camel (Camelus dromedarius) population in Algeria, Mohammed H. Benaissa, Samir Ansel, Curtis R. Youngs, Rachid Kaidi, and Khatima Ait-Oudhia

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Evaluation of the application of bovine, ovine and caprine SNP chips to dromedary genotyping, Francesca Bertolini, Ahmed Elbeltagy, and Max Rothschild

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Adenine-induced hyperphosphatemia in a murine model of renal insufficiency, Elizabeth A. Bobeck, Michelle L. Piccione, Jeff W. Bishop, Tyler G. Fulmer, Denise J. Schwahn, Christian Helvig, Martin Petkovich, and Mark E. Cook

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Effect of feeding three lysine to energy diets on growth, body composition and age at puberty in replacement gilts, J. A. Calderón Díaz, J. L. Vallet, R. D. Boyd, C. A. Lents, T. J. Prince, A. E. DeDecker, C. E. Phillips, G. Foxcroft, and K. J. Stalder

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Postmortem protein degradation is a key contributor to fresh pork loin tenderness, K. B. Carlson, K. J. Prusa, C. A. Fedler, E. M. Steadham, A. C. Outhouse, D. A. King, E. Huff-Lonergan, and S. M. Lonergan

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Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome, Melissa S. Deist, Rodrigo A. Gallardo, David A. Bunn, Jack C. M. Dekkers, Huaijun Zhou, and Susan J. Lamont

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Novel Mechanisms Revealed in the Trachea Transcriptome of Resistant and Susceptible Chicken Lines following Infection with Newcastle Disease Virus, Melissa S. Deist, Rodrigo A. Gallardo, David A. Bunn, Terra R. Kelly, Jack C. M. Dekkers, Huaijun Zhou, and Susan J. Lamont

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Maintaining the safety and quality of beef carcass meat, James S. Dickson and Gary R. Acuff

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Processes to Preserve Spice and Herb Quality and Sensory Integrity During Pathogen Inactivation, Susan E. Duncan, Kayla Moberg, Kemia N. Amin, Melissa Wright, Jordan J. Newkirk, Monica A. Ponder, Gary R. Acuff, and James S. Dickson

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Comparative omega-3 fatty acid enrichment of egg yolks from first-cycle laying hens fed flaxseed oil or ground flaxseed, I. J. Ehr, M. E. Persia, and E. A. Bobeck

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Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure, Damarius S. Fleming, Steffen Weigend, Henner Simianer, Annett Weigend, Max Rothschild, Carl Schmidt, Chris Ashwell, Mike Persia, James Reecy, and Susan J. Lamont

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An economic analysis of sow retention in a United States breed-to-wean system, Tasha R. Gruhot, Julia A. Calderón Díaz, Tom J. Baas, Kevin C. Dhuyvetter, Lee L. Schulz, and Kenneth J. Stalder

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Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis), Daniela Iamartino, Ezequiel L. Nicolazzi, Curtis P. Van Tassell, James M. Reecy, Eric R. Fritz-Waters, James E. Koltes, Stefano Biffani, Tad S. Sonstegard, Steven G. Schroeder, Paolo Ajmone-Marsan, Riccardo Negrini, Rolando Pasquariello, Paola Ramell, Angelo Coletta, Jose F. Garcia, Ahmad Ali, Luigi Ramunno, Gianfranco Cosenza, Denise A. A. de Oliveira, Marcela G. Drummond, Eduardo Bastianetto, Alessandro Davassi, Ali Pirani, Fiona Brew, and John L. Williams

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Chicken hepatic response to chronic heat stress using integrated transcriptome and metabolome analysis, Sara F. Jastrebski, Susan J. Lamont, and Carl J. Schmidt

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Novel MicroRNA Involved in Host Response to Avian Pathogenic Escherichia coli Identified by Deep Sequencing and Integration Analysis, Xinzheng Jia, Qinghua Nie, Xiquan Zhang, Lisa K. Nolan, and Susan J. Lamont

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Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection, Arun Kommadath, Hua Bao, Igseo Choi, James M. Reecy, James E. Koltes, Elyn Fritz-Waters, Chris J. Eisley, Jason R. Grant, Robert R. R. Rowland, Christopher K. Tuggle, Jack C. M. Dekkers, Joan K. Lunney, Le Luo Guan, Paul Stothard, and Graham S. Plastow

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Biphasic Metabolism and Host Interaction of a Chlamydial Symbiont, Lena König, Alexander Siegl, Thomas Penz, Susanne Haider, Cecilia Wentrup, Julia Polzin, Evelyne Mann, Stephan Schmitz-Esser, Daryl Domman, and Matthias Horn

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Evaluation of responses to vaccination of Angus cattle for four viruses that contribute to bovine respiratory disease complex, L. M. Kramer, M. S. Mayes, E. Fritz-Waters, J. L. Williams, E. D. Downey, R. G. Tait Jr., A. Woolums, C. Chase, and J. M. Reecy

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Integrated host and viral transcriptome analyses reveal pathology and inflammatory response mechanisms to ALV-J injection in SPF chickens, Xi Lan, Yan Wang, Kai Tian, Fei Ye, Huadong Yin, Xiaoling Zhao, Hengyong Xu, Yong Huang, Haibo Liu, John C. F. Hsieh, Susan J. Lamont, and Qing Zhu

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Transcriptome Sequencing Reveals Novel Candidate Genes for Cardinium hertigii-Caused Cytoplasmic Incompatibility and Host-Cell Interaction, Evelyn Mann, Corinne M. Stouthamer, Suzanne E. Kelly, Monika Dzieciol, Martha S. Hunter, and Stephan Schmitz-Esser

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Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle, Raluca G. Mateescu, Dorian J. Garrick, and James M. Reecy

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Precision Medicine in Cats: Novel Niemann-Pick Type C1 Diagnosed by Whole-Genome Sequencing, D. A. Mauler, B. Gandolfi, C. R. Reinero, D. P. O'Brien, J. L. Spooner, L. A. Lyons, N. Matthew Ellinwood, Max F. Rothschild, and 99 Lives Consortium

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Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses, George Msalya, Eui-Soo Kim, Emmanuel L. K. Laisser, Maulilio J. Kipanyula, Erson D. Karimuribo, Lughano J. M. Kusiluka, Sebastian W. Chenyambuga, and Max F. Rothschild

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Genomic footprints of dryland stress adaptation in Egyptian fat-tail sheep and their divergence from East African and western Asia cohorts, Joram M. Mwacharo, Eui-Soo Kim, Ahmed R. Elbeltagy, Adel M. Aboul-Naga, Barbara A. Rischkowsky, and Max F. Rothschild

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Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis nigripes), Annie Oh, Jacqueline W. Pearce, Barbara Gandolfi, Erica K. Creighton, William K. Suedmeyer, Michael Selig, Ann P. Bosiack, Leilani J. Castaner, Rebecca E. H. Whiting, Ellen B. Belknap, Leslie A. Lyons, N. Matthew Ellinwood, Dorian J. Garrick, Max F. Rothschild, and 99 Lives Consortium

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A systematic review and meta-analysis of tenderness metrics in control groups used in comparative nutrition experiments, M. J. Powell, C. Yuan, R. S. Dzikamunhenga, R. Tarté, E. Huff-Lonergan, S. M. Lonergan, and A. M. O'Connor

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Transcriptomic changes throughout post-hatch development in Gallus gallus pituitary, Elizabeth M. Pritchett, Susan J. Lamont, and Carl J. Schmidt

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A Hypothesis and Review of the Relationship between Selection for Improved Production Efficiency, Coping Behavior, and Domestication, Wendy M. Rauw, Anna K. Johnson, Luis Gomez-Raya, and Jack C. M. Dekkers

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Effects of Diet and Genetics on Growth Performance of Pigs in Response to Repeated Exposure to Heat Stress, Wendy M. Rauw, E. Johana Mayorga, Soi Meng Lei, Jack C. M. Dekkers, John F. Patience, Nicholas K. Gabler, Steven M. Lonergan, and Lance H. Baumgard

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Review: Effects of Ractopamine Hydrochloride (Paylean) on welfare indicators for market weight pigs, M. J. Ritter, A. K. Johnson, M. E. Benjamin, S. N. Carr, M. Ellis, L. Faucitano, T. Grandin, J. L. Salak-Johnson, D. U. Thomson, C. Goldhawk, and M. S. Calvo-Lorenzo

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Physiological mechanisms through which heat stress compromises reproduction in pigs, Jason W. Ross, Benjamin J. Hale, Jacob T. Seibert, Matthew R. Romoser, Malavika K. Adur, Aileen F. Keating, and Lance H. Baumgard

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Comparative genomics of human and non-human Listeria monocytogenes sequence type 121 strains, Kathrin Rychli, Eva M. Wagner, Luminita Ciolacu, Andreas Zaiser, Taurai Tasara, Martin Wagner, and Stephan Schmitz-Esser

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Genetic parameters and expected responses to selection for components of feed efficiency in a Duroc pig line, Juan P. Sánchez, Mohamed Ragab, Raquel Quintanilla, Max F. Rothschild, and Miriam Piles

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Intestinal microbiota profiles associated with low and high residual feed intake in chickens across two geographical locations, Sina-Catherine Siegerstetter, Stephan Schmitz-Esser, Elizabeth Magowan, Stefanie Urimare Wetzels, Qendrim Zebeli, Peadar G. Lawlor, Niamh E. O'Connell, and Barbara U. Metzler-Zebeli

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Development of an Objective Feet and Leg Conformation Evaluation Method Using Digital Imagery in Swine, J. D. Stock, J. A. Calderón Díaz, C. E. Abell, T. J. Baas, M. F. Rothschild, B. E. Mote, and K. J. Stalder

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Prolapse Incidence in Swine Breeding Herds Is a Cause for Concern, China Supakorn, Joseph D. Stock, Chris Hostetler, and Kenneth J. Stalder

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Genomic Analysis Suggests KITLG is Responsible for a Roan Pattern in two Pakistani Goat Breeds, Andrea Talenti, Francesca Bertolini, Jamie Williams, Muhammad Moaeen-ud-Din, Stefano Frattini, Beatrice Coizet, Giulio Pagnacco, James Reecy, Max F. Rothschild, Paola Crepaldi, and Italian Goat Consortium

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Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat, Angelica Van Goor, Chris M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Identification of genome-wide SNP-SNP interactions associated with important traits in chicken, Hui Zhang, Jia-Qiang Yu, Li-Li Yang, Luke M. Kramer, Xin-Yang Zhang, Wei Na, James M. Reecy, and Hui Li

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RNA-Seq Analyses Identify Frequent Allele Specific Expression and No Evidence of Genomic Imprinting in Specific Embryonic Tissues of Chicken, Zhu Zhuo, Susan J. Lamont, and Behnam Abasht

Submissions from 2016

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Genetic relationship between purebred and crossbred sow longevity, C. E. Abell, R. L. Fernando, T. V. Serenius, M. F. Rothschild, K. A. Gray, and K. J. Stalder

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Effect of Oregano Essential Oil (Origanum vulgare subsp. hirtum) on the Storage Stability and Quality Parameters of Ground Chicken Breast Meat, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Effects of Tannic Acid on Lipid and Protein Oxidation, Color, and Volatiles of Raw and Cooked Chicken Breast Meat during Storage, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Large-scale gene co-expression network as a source of functional annotation for cattle genes, Hamid Beiki, Ardeshir Nejati-Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, and James M. Reecy

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Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle, Justin W. Buchanan, James M. Reecy, Dorian J. Garrick, Qing Duan, Donald C. Beitz, James E. Koltes, Mahdi Saatchi, Lars Koesterke, and Raluca G. Mateescu

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Rubber mat placement in a farrowing and lactation facility: tips and techniques, Magnus Campler, Monique Pairis-Garcia, Kenneth J. Stalder, and Anna K. Johnson

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Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content, Aline S. M. Cesar, Luciana C. A. Regitano, Mirele D. Poleti, Sónia C. S. Andrade, Polyana C. Tizioto, Priscila S. N. Oliveira, Andrezza M. Felício, Michele L. do Nascimento, Amália S. Chaves, Dante P. D. Lanna, Rymer R. Tullio, Renata T. Nassu, James E. Koltes, Eric Frtiz-Waters, Gerson B. Mourão, Adhemar Zerlotini-Neto, James M. Reecy, and Luiz L. Coutinho

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Ovarian follicular dynamics in purebred and crossbred Boran cows in Ethiopia, Tamrat Degefa, Alemayehu Lemma, Jeilu Jemal, Gbremeskel Mamo, Azage Tegegne, and Curtis R. Youngs

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Epimural Indicator Phylotypes of Transiently-Induced Subacute Ruminal Acidosis in Dairy Cattle, Stephan Schmitz Esser, Stefanie U. Wetzels, Evelyne Mann, Barbara U. Metzel-Zebeli, Poulad Pourazad, Muhammad Qumar, Fenja Klevenhusen, Beate Pinior, Martin Wagner, and Qendrim Zebeli

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Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences, D. S. Fleming, J. E. Koltes, E. R. Fritz-Waters, M. F. Rothschild, C. J. Schmidt, C. M. Ashwell, M. E. Persia, J. M. Reecy, and S. J. Lamont

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Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array, D. S. Fleming, J. E. Koltes, A. D. Markey, C. J. Schmidt, C. M. Ashwell, M. F. Rothschild, M. E. Persia, J. M. Reecy, and S. J. Lamont

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Comparison of host genetic factors influencing pig response to infection with two North American isolates of porcine reproductive and respiratory syndrome virus, Andrew S. Hess, Zeenath Islam, Melanie K. Hess, Raymond R. R. Rowland, Joan Lunney, Andrea Doeschl-Wilson, Graham S. Plastow, and Jack C. M. Dekkers

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Developmental progress and current status of the Animal QTLdb, Zhi-Liang Hu, Carissa A. Park, and James M. Reecy

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A short insertion mutation disrupts genesis of miR-16 and causes increased body weight in domesticated chicken, Xinzheng Jia, Huiran Lin, Qinghua Nie, Xiquan Zhang, and Susan J. Lamont

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Antioxidant Effect of Extracts from the Coffee Residue in Raw and Cooked Meat, Ji-Hee Kim, Dong Uk Ahn, Jong Bang Eun, and Sun Hee Moon

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Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle, Luke M. Kramer, M. A. Abdel Ghaffar, J. E. Koltes, E. R. Fritz-Waters, M. S. Mayes, A. D. Sewell, N. T. Weeks, D. J. Garrick, R. L. Fernando, L. Ma, and J. M. Reecy

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Liver transcriptome response to hyperthermic stress in three distinct chicken lines, Xi Lan, John C. F. Hsieh, Carl J. Schmidt, Qing Zhu, and Susan J. Lamont

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Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination, Mi Ok Lee, Susanne Bornelöv, Leif Andersson, Susan J. Lamont, Junfeng Chen, and James E. Womack

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Tissue expression and antibacterial activity of host defense peptides in chicken, Mi Ok Lee, Hyun-Jun Jang, Deivendran Rengaraj, Seo-Yeong Yang, Jae Yong Han, Susan J. Lamont, and James E. Womack

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Comparing the immune responses of two genetically B-complex disparate Fayoumi chicken lines to Eimeria tenella, S.-H. Lee, X. Dong, H. S. Lillehoj, Susan J. Lamont, X. Suo, D. K. Kim, K.-W. Lee, and Y. H. Hong

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The effect of antiseptic compounds on umbilical cord healing in piglets in a commercial facility, Amanda L. Robinson, Jessie D. Colpoys, Glenn D. Robinson, Elizabeth A. Hines, Leo L. Timms, Erika M. Edwards, Ken J. Stalder, Anna K. Johnson, and Howard D. Tyler

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How do sow postures change when lameness is induced using a chemical synovitis model?, A. Roca, A. K. Johnson, L. A. Karriker, L. L. Timms, C. E. Abell, and K. J. Stalder

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Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL, Martine Schroyen, Christopher Eisley, James E. Koltes, Eric Fritz-Waters, Igseo Choi, Graham S. Plastow, Leluo Guan, Paul Stothard, Hua Bao, Arun Kommadath, James M. Reecy, Joan K. Lunney, Robert R. R. Rowland, Jack C. M. Dekkers, and Christopher K. Tuggle

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Heat Stress and Lipopolysaccharide Stimulation of Chicken Macrophage-Like Cell Line Activates Expression of Distinct Sets of Genes, Anna Slawinska, John C. Hsieh, Carl J. Schmidt, and Susan J. Lamont

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Combined analysis of primary lymphoid tissues' transcriptomic response to extra-intestinal Escherichia coli (ExPEC) infection, Hongyan Sun, Ran Bi, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Thymus transcriptome reveals novel pathways in response to avian pathogenic Escherichia coli infection, Hongyan Sun, Peng Liu, Lisa Kay Nolan, and Susan J. Lamont

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Litter-of-origin trait effects on gilt development, J. L. Vallet, J. A. Calderón-Díaz, K. J. Stalder, C. Phillips, R. A. Cushman, J. R. Miles, L. A. Rempel, G. A. Rohrer, C. A. Lents, B. A. Freking, and D. J. Nonneman

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Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress, Angelica Van Goor, Christopher M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Distinct functional responses to stressors of bone marrow derived dendritic cells from diverse inbred chicken lines, Angelica Van Goor, Anna Slawinska, Carl J. Schmidt, and Susan J. Lamont

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High-performance epistasis detection in quantitative trait GWAS, Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, and James M. Reecy

Submissions from 2015

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Coordinated International Action to Accelerate Genome-to-Phenome with FAANG, the Functional Annotation of Animal Genomes Project, Leif Andersson, Alan Archibald, Cynthia D. Bottema, Rudiger Brauning, Shane D. Burgess, Dave W. Burt, Eduardo Casas, Hans H. Cheng, Laura Clarke, Christine Couldrey, Brian P. Dalrymple, Christine G. Elsik, Sylvain Foissac, Elisabett Giuffra, Martien A. M. Groenen, Ben J. Hayes, LuSheng S. Huang, Hassan Khatib, James W. Kijas, Heebal Kim, Joan K. Lunney, Fiona M. McCarthy, John C. McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S. Plastow, James M. Reecy, Gary A. Rohrer, Elena Sarropoulou, Carl J. Schmidt, Jeffrey Silverstein, Ross L. Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K. Tuggle, Johanna Vilkki, Stephen N. White, Shuhong Zhao, Huaijun Zhou, and The FAANG Consortium

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RAPTR-SV: A Hybrid Method for the Detection of Structural Variants, Derek M. Bickhart, Jana L. Hutchison, Lingyang Xu, Robert Schnabel, Jeremy F. Taylor, James M. Reecy, Steven Schroeder, Curt P. Van Tassell, Tad S. Sonstegard, and George E. Liu

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Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age, J. A. Calderón Díaz, J. L. Vallet, C. A. Lents, D. J. Nonneman, J. R. Miles, E. C. Wright, L. A. Rempel, R. A. Cushman, B. A. Freking, G. A. Rohrer, C. Phillips, A. DeDecker, G. Foxcroft, and K. Stalder

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Optimal dietary energy and amino acids for gilt development: Growth, body composition, feed intake, and carcass composition traits, J. A. Calderón Díaz, J. L. Vallet, T. J. Prince, C. E. Phillips, A. E. DeDecker, and K. J. Stalder

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Putative Regulatory Factors Associated with Intramuscular Fat Content, Aline A. M. Cesar, Luciana C. A. Regitano, James Eugene Koltes, Eric R. Fritz-Waters, Dante P. D. Lanna, Gustavo Gasparin, Gerson B. Mourão, Priscila S. N. Oliveira, James M. Reecy, and Luiz L. Coutinho