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Submissions from 2017

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RNA-Seq Analyses Identify Frequent Allele Specific Expression and No Evidence of Genomic Imprinting in Specific Embryonic Tissues of Chicken, Zhu Zhuo, Susan J. Lamont, and Behnam Abasht

Submissions from 2016

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Genetic relationship between purebred and crossbred sow longevity, C. E. Abell, R. L. Fernando, T. V. Serenius, M. F. Rothschild, K. A. Gray, and K. J. Stalder

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Comparison of growth and efficiency of dietary energy utilization by growing pigs offered feeding programs based on the metabolizable energy or the net energy system, J. Acosta, John F. Patience, and R. D. Boyd

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Effect of Oregano Essential Oil (Origanum vulgare subsp. hirtum) on the Storage Stability and Quality Parameters of Ground Chicken Breast Meat, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Effects of Tannic Acid on Lipid and Protein Oxidation, Color, and Volatiles of Raw and Cooked Chicken Breast Meat during Storage, Marwan Al-Hijazeen, Eun Joo Lee, Aubrey Mendonca, and Dong Uk Ahn

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Model comparison to evaluate a shell quality bio-complex in layer hens, J. Arango, Anna Wolc, P. Settar, and N. P. O'Sullivan

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Blueprint: Selection for feed efficiency helps pigs adapt to stressors, Samaneh Azarpajouh, Jessica Colpoys, Jack Dekkers, Nicholas Gabler, John Patience, and Anna Johnson

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Large-scale gene co-expression network as a source of functional annotation for cattle genes, Hamid Beiki, Ardeshir Nejati-Javaremi, Abbas Pakdel, Ali Masoudi-Nejad, Zhi-Liang Hu, and James M. Reecy

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Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle, Justin W. Buchanan, James M. Reecy, Dorian J. Garrick, Qing Duan, Donald C. Beitz, James E. Koltes, Mahdi Saatchi, Lars Koesterke, and Raluca G. Mateescu

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Rubber mat placement in a farrowing and lactation facility: tips and techniques, Magnus Campler, Monique Pairis-Garcia, Kenneth J. Stalder, and Anna K. Johnson

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Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content, Aline S. M. Cesar, Luciana C. A. Regitano, Mirele D. Poleti, Sónia C. S. Andrade, Polyana C. Tizioto, Priscila S. N. Oliveira, Andrezza M. Felício, Michele L. do Nascimento, Amália S. Chaves, Dante P. D. Lanna, Rymer R. Tullio, Renata T. Nassu, James E. Koltes, Eric Frtiz-Waters, Gerson B. Mourão, Adhemar Zerlotini-Neto, James M. Reecy, and Luiz L. Coutinho

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Ovarian follicular dynamics in purebred and crossbred Boran cows in Ethiopia, Tamrat Degefa, Alemayehu Lemma, Jeilu Jemal, Gbremeskel Mamo, Azage Tegegne, and Curtis R. Youngs

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Epimural Indicator Phylotypes of Transiently-Induced Subacute Ruminal Acidosis in Dairy Cattle, Stephan Schmitz Esser, Stefanie U. Wetzels, Evelyne Mann, Barbara U. Metzel-Zebeli, Poulad Pourazad, Muhammad Qumar, Fenja Klevenhusen, Beate Pinior, Martin Wagner, and Qendrim Zebeli

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Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences, D. S. Fleming, J. E. Koltes, E. R. Fritz-Waters, M. F. Rothschild, C. J. Schmidt, C. M. Ashwell, M. E. Persia, J. M. Reecy, and S. J. Lamont

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Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array, D. S. Fleming, J. E. Koltes, A. D. Markey, C. J. Schmidt, C. M. Ashwell, M. F. Rothschild, M. E. Persia, J. M. Reecy, and S. J. Lamont

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A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1, Janet E. Fulton, Amy M. McCarron, Ashlee R. Lund, Kara N. Pinegar, Anna Wolc, Olympe Chazara, Bertrand Bed’Hom, Mark Berres, and Marcia M. Miller

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Twelve hours of heat stress induces inflammatory signaling in porcine skeletal muscle, Shanthi Ganesan, Carme Reynolds, Katrin Hollinger, Sarah C. Pearce, Nicholas K. Gabler, Lance H. Baumgard, Robert P. Rhoads, and Joshua T. Selsby

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Effects of distillers' dried grains with solubles and soybean oil on dietary lipid, fiber, and amino acid digestibility in corn-based diets fed to growing pigs, N. A. Gutierrez, Nick V. L. Serão, and John F. Patience

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Comparison of host genetic factors influencing pig response to infection with two North American isolates of porcine reproductive and respiratory syndrome virus, Andrew S. Hess, Zeenath Islam, Melanie K. Hess, Raymond R. R. Rowland, Joan Lunney, Andrea Doeschl-Wilson, Graham S. Plastow, and Jack C. M. Dekkers

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Developmental progress and current status of the Animal QTLdb, Zhi-Liang Hu, Carissa A. Park, and James M. Reecy

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A short insertion mutation disrupts genesis of miR-16 and causes increased body weight in domesticated chicken, Xinzheng Jia, Huiran Lin, Qinghua Nie, Xiquan Zhang, and Susan J. Lamont

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Does heat stress alter the pig's response to dietary fat?, T. A. Kellner, Lance H. Baumgard, Kenneth J. Prusa, Nicholas K. Gabler, and John F. Patience

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Antioxidant Effect of Extracts from the Coffee Residue in Raw and Cooked Meat, Ji-Hee Kim, Dong Uk Ahn, Jong Bang Eun, and Sun Hee Moon

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Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle, Luke M. Kramer, M. A. Abdel Ghaffar, J. E. Koltes, E. R. Fritz-Waters, M. S. Mayes, A. D. Sewell, N. T. Weeks, D. J. Garrick, R. L. Fernando, L. Ma, and J. M. Reecy

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Liver transcriptome response to hyperthermic stress in three distinct chicken lines, Xi Lan, John C. F. Hsieh, Carl J. Schmidt, Qing Zhu, and Susan J. Lamont

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Duplication of chicken defensin7 gene generated by gene conversion and homologous recombination, Mi Ok Lee, Susanne Bornelöv, Leif Andersson, Susan J. Lamont, Junfeng Chen, and James E. Womack

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Tissue expression and antibacterial activity of host defense peptides in chicken, Mi Ok Lee, Hyun-Jun Jang, Deivendran Rengaraj, Seo-Yeong Yang, Jae Yong Han, Susan J. Lamont, and James E. Womack

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Comparing the immune responses of two genetically B-complex disparate Fayoumi chicken lines to Eimeria tenella, S.-H. Lee, X. Dong, H. S. Lillehoj, Susan J. Lamont, X. Suo, D. K. Kim, K.-W. Lee, and Y. H. Hong

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Defining the physical properties of corn grown under drought-stressed conditions and the associated energy and nutrient content for swine, M. A. Newman, Charles R. Hurburgh, and John F. Patience

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Plethysmography measurements of respiratory function in conscious unrestrained mice, John C. Quindry, Christopher G. Ballmann, Erin E. Epstein, and Joshua T. Selsby

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The effect of antiseptic compounds on umbilical cord healing in piglets in a commercial facility, Amanda L. Robinson, Jessie D. Colpoys, Glenn D. Robinson, Elizabeth A. Hines, Leo L. Timms, Erika M. Edwards, Ken J. Stalder, Anna K. Johnson, and Howard D. Tyler

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How do sow postures change when lameness is induced using a chemical synovitis model?, A. Roca, A. K. Johnson, L. A. Karriker, L. L. Timms, C. E. Abell, and K. J. Stalder

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Commercial Hy-Line W-36 pullet and laying hen venous blood gas and chemistry profiles utilizing the portable i-STAT®1 analyzer, T. P. Schaal, J. Arango, Anna Wolc, J. V. Brady, J. E. Fulton, I. Rubinoff, I. J. Ehr, M. E. Persia, and N. P. O'Sullivan

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Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL, Martine Schroyen, Christopher Eisley, James E. Koltes, Eric Fritz-Waters, Igseo Choi, Graham S. Plastow, Leluo Guan, Paul Stothard, Hua Bao, Arun Kommadath, James M. Reecy, Joan K. Lunney, Robert R. R. Rowland, Jack C. M. Dekkers, and Christopher K. Tuggle

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Heat Stress and Lipopolysaccharide Stimulation of Chicken Macrophage-Like Cell Line Activates Expression of Distinct Sets of Genes, Anna Slawinska, John C. Hsieh, Carl J. Schmidt, and Susan J. Lamont

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Long-Term Quercetin Dietary Enrichment Partially Protects Dystrophic Skeletal Muscle, Hannah R. Spaulding, Christopher G. Ballmann, John C. Quindry, and Joshua T. Selsby

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Combined analysis of primary lymphoid tissues' transcriptomic response to extra-intestinal Escherichia coli (ExPEC) infection, Hongyan Sun, Ran Bi, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Thymus transcriptome reveals novel pathways in response to avian pathogenic Escherichia coli infection, Hongyan Sun, Peng Liu, Lisa Kay Nolan, and Susan J. Lamont

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Litter-of-origin trait effects on gilt development, J. L. Vallet, J. A. Calderón-Díaz, K. J. Stalder, C. Phillips, R. A. Cushman, J. R. Miles, L. A. Rempel, G. A. Rohrer, C. A. Lents, B. A. Freking, and D. J. Nonneman

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Quantitative trait loci identified for blood chemistry components of an advanced intercross line of chickens under heat stress, Angelica Van Goor, Christopher M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Distinct functional responses to stressors of bone marrow derived dendritic cells from diverse inbred chicken lines, Angelica Van Goor, Anna Slawinska, Carl J. Schmidt, and Susan J. Lamont

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Cathepsin mRNA level in bovine cumulus cells fails to be a good marker of oocyte quality, Ewelina Warzych, Adam Cieslak, Anna Wolc, and Dorota Lechniak

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High-performance epistasis detection in quantitative trait GWAS, Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, Marina Kraeva, Li Ma, Luke M. Kramer, James E. Koltes, and James M. Reecy

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Effects of number of training generations on genomic prediction for various traits in a layer chicken population, Ziqing Weng, Anna Wolc, Xia Shen, Rohan L. Fernando, Jack C. M. Dekkers, Jesus Arango, Petek Settar, Janet E. Fulton, Neil P. O'Sullivan, and Dorian J. Garrick

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Mixture models detect large effect QTL better than GBLUP and result in more accurate and persistent predictions, Anna Wolc, Jesus Arango, Petek Settar, Janet E. Fulton, Neil P. O'Sullivan, Jack C. M. Dekkers, Rohan Fernando, and Dorian J. Garrick

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Effect of selection for residual feed intake during the grow/finish phase of production on sow reproductive performance and lactation efficiency, J. M. Young, R. Bergsma, E. F. Knol, John F. Patience, and Jack C. M. Dekkers

Submissions from 2015

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Coordinated International Action to Accelerate Genome-to-Phenome with FAANG, the Functional Annotation of Animal Genomes Project, Leif Andersson, Alan Archibald, Cynthia D. Bottema, Rudiger Brauning, Shane D. Burgess, Dave W. Burt, Eduardo Casas, Hans H. Cheng, Laura Clarke, Christine Couldrey, Brian P. Dalrymple, Christine G. Elsik, Sylvain Foissac, Elisabett Giuffra, Martien A. M. Groenen, Ben J. Hayes, LuSheng S. Huang, Hassan Khatib, James W. Kijas, Heebal Kim, Joan K. Lunney, Fiona M. McCarthy, John C. McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S. Plastow, James M. Reecy, Gary A. Rohrer, Elena Sarropoulou, Carl J. Schmidt, Jeffrey Silverstein, Ross L. Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K. Tuggle, Johanna Vilkki, Stephen N. White, Shuhong Zhao, Huaijun Zhou, and The FAANG Consortium

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RAPTR-SV: A Hybrid Method for the Detection of Structural Variants, Derek M. Bickhart, Jana L. Hutchison, Lingyang Xu, Robert Schnabel, Jeremy F. Taylor, James M. Reecy, Steven Schroeder, Curt P. Van Tassell, Tad S. Sonstegard, and George E. Liu

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Age at puberty, ovulation rate, and uterine length of developing gilts fed two lysine and three metabolizable energy concentrations from 100 to 260 d of age, J. A. Calderón Díaz, J. L. Vallet, C. A. Lents, D. J. Nonneman, J. R. Miles, E. C. Wright, L. A. Rempel, R. A. Cushman, B. A. Freking, G. A. Rohrer, C. Phillips, A. DeDecker, G. Foxcroft, and K. Stalder

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Optimal dietary energy and amino acids for gilt development: Growth, body composition, feed intake, and carcass composition traits, J. A. Calderón Díaz, J. L. Vallet, T. J. Prince, C. E. Phillips, A. E. DeDecker, and K. J. Stalder

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Putative Regulatory Factors Associated with Intramuscular Fat Content, Aline A. M. Cesar, Luciana C. A. Regitano, James Eugene Koltes, Eric R. Fritz-Waters, Dante P. D. Lanna, Gustavo Gasparin, Gerson B. Mourão, Priscila S. N. Oliveira, James M. Reecy, and Luiz L. Coutinho

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Feed efficiency effects on barrow and gilt behavioral reactivity to novel stimuli tests, Jessica D. Colpoys, Caitlyn Abell, Nicholas K. Gabler, Aileen F. Keating, Suzanne T. Millman, Janice Siegford, Jennifer M. Young, and Anna Johnson

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Transcriptome Analysis of Post-Hatch Breast Muscle in Legacy and Modern Broiler Chickens Reveals Enrichment of Several Regulators of Myogenic Growth, Richard V. N. Davis, Susan J. Lamont, Max F. Rothschild, Michael E. Persia, Chris M. Ashwell, and Carl J. Schmidt

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Sire Breed Effect on Beef Longissimus Mineral Concentrations and Their Relationships with Carcass and Palatability Traits, Q. Duan, Richard G. Tait Jr., M. J. Schneider, Donald C. Beitz, Tommy L. Wheeler, S. D. Shackelford, Larry V. Cundiff, and James M. Reecy

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Pork as a Source of Omega-3 (n-3) Fatty Acids, Michael E. R. Dugan, Payam Vahmani, Tyler D. Turner, Cletos Mapiye, Manuel Juárez, Nuria Prieto, Angela D. Beaulieu, Ruurd T. Zijlstra, John F. Patience, and Jennifer L. Aalhus

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Association of Serum Antibody Levels Following Vaccination with A Modified Live BVDV Vaccine and Protection from Clinical Disease upon Challenge, Shollie M. Falkenberg, Julia Ridpath, Richard G. Tait Jr., Brian Lee Vander Ley, Fernando F. Bauermann, and James M. Reecy

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Phosphoramide mustard exposure induces DNA adduct formation and the DNA damage repair response in rat ovarian granulosa cells, Shanthi Ganesan and Aileen F. Keating

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Impact of obesity on 7,12-dimethylbenz[a]anthracene-induced altered ovarian connexin gap junction proteins in female mice, Shanthi Ganesan, Jackson Nteeba, and Aileen F. Keating

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Effects of drought-affected corn and nonstarch polysaccharide enzyme inclusion on nursery pig growth performance, C. K. Jones, E. L. Frantz, A. C. Bingham, J. R. Bergstrom, J. M. DeRouchey, and John F. Patience

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Genetically Disparate Fayoumi Chicken Lines Show Different Response to Avian Necrotic Enteritis, Duk K. Kim, Hyun S. Lillehoj, Seung I. Jang, Sung H. Lee, Yeong H. Hong, and Susan J. Lamont

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Identification of signatures of selection for intramuscular fat and backfat thickness in two Duroc populations, Eui-Soo Kim, Roger Ros-Freixedes, Ramona N. Pena, Thomas J. Baas, Joan Estany, and Max F. Rothschild

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Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions, Eui-Soo Kim, Tad S. Sonstegard, and Max F. Rothschild

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The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection, Eui-Soo Kim, Tad S. Sonstegard, Curt P. Van Tassell, George Wiggans, and Max F. Rothschild

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Identification of a Putative Quantitative Trait Nucleotide in Guanylate Binding Protein 5 for Host Response to PRRS Virus Infection, James Eugene Koltes, Eric R. Fritz-Waters, Christopher J. Eisley, Igseo Choi, Hua Bao, Arun Kommadath, Nick V. L. Serão, Nicholas James Boddicker, Samuel M. Abrams, Martine Schroyen, Hyelee Park Loyd, Christopher K. Tuggle, Graham S. Plastow, LeLuo Guan, Paul Stothard, Joan K. Lunney, Peng Liu, Susan Carpenter, Raymond Rowland, Jack C. M. Dekkers, and James M. Reecy

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Transcriptional Profiling of PRKG2-Null Growth Plate Identifies Putative Down-Stream Targets of PRKG2, James Eugene Koltes, Dinesh Kumar, Ranjit S. Kataria, Vickie L. Cooper, and James M. Reecy

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Control of Listeria monocytogenes on Alternatively Cured Ready-to-Eat Ham Using Natural Antimicrobial Ingredients in Combination with Post- Lethality Interventions, N A Lavieri, J G Sebranek, J C Cordray, J S Dickson, A M Horsch, S Jung, D K Manu, A F Mendonca, and B Brehm-Stecher

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Genome-Wide DNA Methylome Variation in Two Genetically Distinct Chicken Lines Using MethylC-Seq, Jinxiu Li, Rujiao Li, Ying Wang, Xiaoxiang Hu, Yiqiang Zhao, Li LI, Chungang Feng, Xiaorong Gu, Fang Liang, Susan J. Lamont, Songnian Hu, Huaijun Zhou, and Ning Li

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Heat Stress Alters Ovarian Insulin-Mediated Phosphatidylinositol-3 Kinase and Steroidogenic Signaling in Gilt Ovaries, Jackson Nteeba, M. Victoria Sanz-Fernandez, Robert P. Rhoads, Lance H. Baumgard, Jason W. Ross, and Aileen F. Keating

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Pharmacokinetics of meloxicam in mature swine after intravenous andoral administration, Monique D. Pairis-Garcia, Anna Johnson, Butch Kukanich, Larry W. Wulf, Suzanne T. Millman, Kenneth J. Stalder, Locke A. Karriker, and Johann F. Coetzee

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A review of feed efficiency in swine: biology and application, John F. Patience, Mariana C. Rossoni Serao, and Néstor A. Gutiérrez

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Acute Heat Stress and Reduced Nutrient Intake Alter Intestinal Proteomic Profile and Gene Expression in Pigs, Sarah C. Pearce, Steven M. Lonergan, Elisabeth J. Huff-Lonergan, Lance H. Baumgard, and Nicholas K. Gabler

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Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: A comparison of pigs with different postweaning growth rates, C. M. Pilcher, C. K. Jones, M. Schroyen, A. J. Severin, J. F. Patience, C. K. Tuggle, and J. E. Koltes

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Effect of fenbendazole on shedding and embryonation of Ascaris suum eggs from naturally infected sows, Jeremy S. Pittman, Gil H. Myers, Kenneth J. Stalder, and Locke A. Karriker

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The effect of selection for residual feed intake on scale-activity and scale-exit scores in Yorkshire gilts, Larry J. Sadler, Anna Johnson, Dan Nettleton Dr., C. R. G. Lewis, J. M. Young, Steven M. Lonergan, and Jack C. Dekkers

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Third Report on Chicken Genes and Chromosomes 2015, M. Schmid, J. Smith, D. W. Burt, B. L. Aken, P. B. Antin, A. L. Archibald, C. Ashwell, P. J. Blackshear, C. Boschiero, C. T. Brown, S. C. Burgess, H. H. Cheng, W. Chow, D. J. Coble, A. Cooksey, R. P. M. A.. Crooijmans, J. Damas, R. V. N. Davis, D.-J. de Koning, M. E. Delany, T. Derrien, T. T. Desta, I. C Dunn, M. Dunn, H. Ellegren, L. Eöry, I. Erb, M. Farré, M. Fasold, D. Fleming, P. Flicek, K. E. Fowler, L. Frésard, D. P. Froman, V. Garceau, P. P. Gardner, A. A. Gheyas, D. K. Griffin, M. A. M. Groenen, T. Haaf, O. Hanotte, A. Hart, J. Häsler, S. B. Hedges, J. Hertel, K. Howe, A. Hubbard, D. A. Hume, P. Kaiser, D. Kedra, S. J. Kemp, C. Klopp, K. E. Kniel, R. Kuo, S. Lagarrigue, Susan J. Lamont, D. M. Larkin, R. A. Lawal, S. M. Markland, F. McCarthy, H. A. McCormack, M. C. McPherson, A. Motegi, S. A. Muljo, A. Münsterberg, R. Nag, I. Nanda, M. Neuberger, A. Nitsche, C. Notredame, H. Noyes, R. O'Connor, E. A. O'Hare, A. J. Oler, S. C. Ommeh, H. Pais, M. Persia, F. Pitel, L. Preeyanon, P. Prieto Barja, E. M. Pritchett, D. D. Rhoads, C. M. Robinson, M. N. Romanov, M. Rothschild, P.-F. Roux, C. J. Schmidt, A.-S. Schneider, M. G. Schwartz, S. M. Searle, M. A. Skinner, C. A. Smith, P. F. Stadler, T. E. Steeves, C. Steinlein, L. Sun, M. Takata, I. Ulitsky, Q. Wang, Y. Wang, W. C. Warren, J. M. D. Wood, D. Wragg, and H. Zhou

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RNA-seq: primary cells, cell lines and heat stress, Carl J. Schmidt, Elizabeth M. Pritchett, Liang Sun, Richard V. N. Davis, Allen Hubbard, Kalmia E. Kniel, Sarah M. Markland, Qing Wang, Chris Ashwell, Michael Persia, Max F. Rothschild, and Susan J. Lamont

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Whole Blood Microarray Analysis of Pigs Showing Extreme Phenotypes after a Porcine Reproductive and Respiratory Syndrome Virus Infection, Martine Schroyen, Juan Pedro Steibel, James Eugene Koltes, Igseo Choi, Nancy E. Raney, Christopher J. Eisley, Eric R. Fritz-Waters, James M. Reecy, Jack C. M. Dekkers, Robert R. R. Rowland, Joan K. Lunney, Catherine W. Ernst, and Christopher K. Tuggle

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Nitrate, Nitrite, and Cured Versus Uncured Meats, Joseph G. Sebranek

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Porcine Models of Muscular Dystrophy, Joshua T. Selsby, Jason W. Ross, Dan Nonneman, and Katrin Hollinger

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The BioMart Community Portal: An Innovative Alternative to Large, Centralized Data Repositories, Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James Allen, Olivier Arnaiz, Mohammad Hamza Awedh, Richard Baldock, Giulia Barbiera, Philippe Bardou, Tim Beck, Andrew Blake, Meredith Bonierbale, Anthony J. Brookes, Gabrielle Bucci, Iwan Bueti, Sarah Burge, Cédric Cabua, Joseph W. Carlson, Claude Chelala, Charalambos Chrysostomou, Davide Citaro, Olivier Collin, Raul Cordova, Rosalind J. Cutts, Erik Dassi, Alex Di Genova, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras, Julia Fernandez-Banet, Simon Forbes, Robert C. Free, Takamoto Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David Goodstein, Kristian Gray, José Alfonso Guerra-Assunção, Bernard Haggarty, Dong-Jin Han, Byung Woo Han, Todd Harris, Jayson Harshbarger, Robert K. Hastings, Richard D. Hayes, Claire Hoede, Shen Hu, Zhi-Liang Hu, Lucie Hutchins, Zhengyan Kan, Hideya Kawaji, Aminah Keliet, Arnaud Kerhornou, Sunghoon Kim, Rhoda Kinsella, Christophe Klopp, Lei Kong, Daniel Lawson, Dejan Lazarevic, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Lio, Chu-Jun Liu, Jie Luo, Alejandro Maass, Jerome Mariette, Thomas Maurel, Stefania Merella, Azza Mostafa Mohamed, Francois Moreews, Ibounyamine Nabihoudine, Nelson Ndegwa, Céline Noirot, Cristian Perez-Llamas, Michael Primig, Alessandro Quattrone, Hasi Quesneville, Davide Rambaldi, James M. Reecy, Michela Riba, Steven Rosanoff, Amna Ali Saddiq, Elise Salas, Olivier Sallou, Rebecca Shepherd, Reinhard Simon, Linda Sperling, William Spooner, Daniel M. Staines, Delphine Steinbach, Kevin Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa, Shi-Jian Zhang, and Arek Kasprzyk

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Avian Pathogenic Escherichia coli (APEC) Infection Alters Bone Marrow Transcriptome in Chickens, Hongyan Sun, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Novel Pathways Revealed in Bursa of Fabricius Transcriptome in Response to Extraintestinal Pathogenic Escherichia coli (ExPEC) Infection, Hongyan Sun, Peng Liu, Lisa K. Nolan, and Susan J. Lamont

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Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line, Liang Sun, Susan J. Lamont, Amanda M. Cooksey, Fiona M. McCarthy, Catalina O. Tudor, K. Vijay-Shanker, Rachael M. DeRita, Max F. Rothschild, Chris M. Ashwell, Michael E. Persia, and Carl J. Schmidt

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Detection of Quantitative Trait Loci for Mineral Content of Nelore Longissimus Dorsi Muscle, Polyana C. Tizioto, Jeremy F. Taylor, Jared E. Decker, Caio F. Gromboni, Maurício A. Mudadu, Robert Schnabel, Luiz L. Coutinho, Gerson B. Mourão, Priscila S. N. Oliveira, Marcela M. Souza, James M. Reecy, Renata T. Nassu, Flavia A. Bressani, Patricia Tholon, Tad S. Sonstegard, Maurício M. Alencar, Rymer R. Tullio, Ana R. A. Nogueira, and Luciana C. A. Regitano

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Identification of quantitative trait loci for body temperature, body weight, breast yield, and digestibility in an advanced intercross line of chickens under heat stress, Angelica Van Goor, Kevin J. Bolek, Chris M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, and Susan J. Lamont

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Effects of dietary fiber on cecal short-chain fatty acid and cecal microbiota of broiler and laying-hen chicks, Muhammed Walugembe, John C. F. Hsieh, Nicholas J. Koszewski, Susan J. Lamont, Michael E. Persia, and Max F. Rothschild

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The effects of line crossing following selection in mice, Anna Wolc, Werner Schlote, and Tomasz Szwaczkowski

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Response and Inbreeding from a Genomic Selection Experiment in Layer Chickens, Anna Wolc, Honghua Zhao, Jesus Arango, Petek Settar, Janet E. Fulton, Neil P. O'Sullivan, Rudolf Preisinger, Christine Stricker, David Habier, Rohan L. Fernando, Dorian J. Garrick, Susan J. Lamont, and Jack C. Dekkers

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Gene Co-Expression Network Analysis Provides Novel Insights into Myostatin Regulation at Three Different Mouse Developmental Timepoints, Xuerong Yang, James Eugene Koltes, Carissa A. Park, Daiwen Chen, and James M. Reecy

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RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies, Zhu Zhuo, Susan J. Lamont, Willaim R. Lee, and Behnam Abasht

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RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies, Zhu Zhuo, Susan J. Lamont, William R. Lee, and Behnam Abasht

Submissions from 2014

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Total cost estimation for implementing genome-enabled selection in a multi-level swine production system, Caitlyn E. Abell, Jack C. Dekkers, Max F. Rothschild, John W. Mabry, and Kenneth J. Stalder

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Using Classification Trees to Detect Induced Sow Lameness with a Transient Model, Caitlyn E. Abell, Anna K. Johnson, Locke A. Karriker, Max F. Rothschild, Steven J. Hoff, G. Sun, R. F. Fitzgerald, and Kenneth J. Stalder

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Evaluation of Variant Identification Methods for Whole Genome Sequencing Data in Dairy Cattle, Christine F. Baes, Marlies A. Dolezal, James Eugene Koltes, Beat Bapst, Eric R. Fritz-Waters, Sandra Jansen, Christine Flury, Heidi Signer-Hasler, Christine Stricker, Rohan L. Fernando, Ruedi Fries, Juerg Moll, Dorian J. Garrick, James M. Reecy, and Birgit Gredler

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Effects of xylanase supplementation of corn-soybean meal-dried distiller's grain diets on performance, metabolizable energy, and body composition when fed to first-cycle laying hens, E. A. Bobeck, N. A. Nachtrieb, A. B. Batal, and M. E. Persia

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Genome-Wide Association and Genomic Prediction for Host Response to Porcine Reproductive and Respiratory Syndrome Virus Infection, Nicholas James Boddicker, Angelica G. Bjorkquist, Raymond Rowland, Joan K. Lunney, James M. Reecy, and Jack C. Dekkers

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Validation and Further Characterization of a Major Quantitative Trait Locus Associated with Host Response to Experimental Infection with Porcine Reproductive and Respiratory Syndrome Virus, Nicholas James Boddicker, Dorian J. Garrick, Raymond Rowland, Joan K. Lunney, James M. Reecy, and Jack C. Dekkers

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Gestational Heat Stress Alters Postnatal Offspring Body Composition Indices and Metabolic Parameters in Pigs, Rebecca L. Boddicker, Jacob T. Seibert, Jay S. Johnson, Sarah C. Pearce, Joshua T. Selsby, Nicholas K. Gabler, Matthew C. Lucy, Timothy J. Safranski, Robert P. Rhoads, Lance H. Baumgard, and Jason W. Ross

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Predicting Time Cattle Spend in Streams to Quantify Direct Deposition of Manure, Shannon B. Brown, Charles D. Ikenberry, Michelle L. Soupir, Justin J. Bisinger, and James R. Russell

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Survival of Methicillin-Resistant Staphylococcus aureus During Thermal Processing of Frankfurters, Summer Sausage, and Ham, Johnathan A. Campbell, James S. Dickson, Joseph C. Cordray, Dennis G. Olson, Aubrey F. Mendonca, and Kenneth J. Prusa