Campus Units
Biochemistry, Biophysics and Molecular Biology, Roy J. Carver Department of, Mathematics, Bioinformatics and Computational Biology
Document Type
Article
Publication Version
Published Version
Publication Date
1-1-2007
Journal or Book Title
Nucleic Acids Research
Volume
35
Issue
Suppl_1
First Page
D202
Last Page
D207
DOI
10.1093/nar/gkl802
Abstract
Protein Inter-atomic Distance Distributions (PIDD) is a dedicated database and structural bio-informatics system for distance based protein modeling. The database is developed to host and analyze the statistical data for protein inter-atomic distances based on their distributions in databases of known protein structures such as in the Protein Data Bank (PDB). PIDD is capable of generating, caching, and displaying the statistical distributions of the distances of various types and ranges. The collected information can be used to extract geometric restraints or mean-force potentials for protein structure determination including nuclear magnetic resonance structure determination and comparative model refinement. PIDD is supported with a friendly designed web interface so that users can easily specify the distance types and ranges, and retrieve, visualize or download the distributions of the distances as they desire.
Creative Commons License
This work is licensed under a Creative Commons Attribution-Noncommercial 4.0 License
Copyright Owner
The Authors
Copyright Date
2006
Language
en
File Format
application/pdf
Recommended Citation
Wu, Di; Jernigan, Robert; and Wu, Zhijun, "PIDD: database for Protein Inter-atomic Distance Distributions" (2007). Biochemistry, Biophysics and Molecular Biology Publications. 173.
https://lib.dr.iastate.edu/bbmb_ag_pubs/173
Included in
Biochemistry, Biophysics, and Structural Biology Commons, Bioinformatics Commons, Computational Biology Commons
Comments
This article is published as Wu, Di, Feng Cui, Robert Jernigan, and Zhijun Wu. "PIDD: database for protein inter-atomic distance distributions." Nucleic acids research 35, no. suppl_1 (2006): D202-D207. doi: 10.1093/nar/gkl802. Posted with permission.