Campus Units

Biochemistry, Biophysics and Molecular Biology, Roy J. Carver Department of, Mathematics, Bioinformatics and Computational Biology

Document Type

Article

Publication Version

Published Version

Publication Date

1-1-2007

Journal or Book Title

Nucleic Acids Research

Volume

35

Issue

Suppl_1

First Page

D202

Last Page

D207

DOI

10.1093/nar/gkl802

Abstract

Protein Inter-atomic Distance Distributions (PIDD) is a dedicated database and structural bio-informatics system for distance based protein modeling. The database is developed to host and analyze the statistical data for protein inter-atomic distances based on their distributions in databases of known protein structures such as in the Protein Data Bank (PDB). PIDD is capable of generating, caching, and displaying the statistical distributions of the distances of various types and ranges. The collected information can be used to extract geometric restraints or mean-force potentials for protein structure determination including nuclear magnetic resonance structure determination and comparative model refinement. PIDD is supported with a friendly designed web interface so that users can easily specify the distance types and ranges, and retrieve, visualize or download the distributions of the distances as they desire.

Comments

This article is published as Wu, Di, Feng Cui, Robert Jernigan, and Zhijun Wu. "PIDD: database for protein inter-atomic distance distributions." Nucleic acids research 35, no. suppl_1 (2006): D202-D207. doi: 10.1093/nar/gkl802. Posted with permission.

Creative Commons License

Creative Commons Attribution-NonCommercial 4.0 International License
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License

Copyright Owner

The Authors

Language

en

File Format

application/pdf

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