Campus Units
Biochemistry, Biophysics and Molecular Biology, Mathematics, Bioinformatics and Computational Biology
Document Type
Article
Publication Version
Accepted Manuscript
Publication Date
2009
Journal or Book Title
International Journal of Data Mining and Bioinformatics
Volume
3
Issue
4
First Page
469
Last Page
482
DOI
10.1504/IJDMB.2009.029207
Abstract
PRTAD is a dedicated database and structural bioinformatics system for protein analysis and modelling. The database is developed to host and analyse the statistical data for protein residue level 'virtual' bond and torsion angles obtained from their distributions in databases of known protein structures such as in the PDB Data Bank. PRTAD is capable of generating, caching, and displaying the statistical distributions of the angles of various types. The collected information can be used to extract geometric restraints or define statistical potentials for protein structure determination. PRTAD is supported with a friendly designed web interface so that users can easily specify the angle types, and retrieve, visualise, or download the distributions of the angles as they desire.
Copyright Owner
Inderscience Enterprises Ltd.
Copyright Date
2009
Language
en
File Format
application/pdf
Recommended Citation
Sun, Xiaoyong; Wu, Di; Jernigan, Robert L.; and Wu, Zhijun, "PRTAD: A Database for Protein Residue Torsion Angle Distributions" (2009). Biochemistry, Biophysics and Molecular Biology Publications. 47.
https://lib.dr.iastate.edu/bbmb_ag_pubs/47
Included in
Bioinformatics Commons, Molecular Biology Commons, Numerical Analysis and Computation Commons
Comments
This is the accepted manuscript of an article from International Journal of Data Mining and Bioinformatics 3 (2009): 469–482, doi:10.1504/IJDMB.2009.029207. Posted with permission.