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Submissions from 2008

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Orientational distributions of contact clusters in proteins closely resemble those of an icosahedron, Yaping Feng, Robert L. Jernigan, and Andrzej Kloczkowski

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Bacterial expression and purification of Interleukin-2 Tyrosine kinase: Single step separation of the chaperonin impurity, Raji E. Joseph and Amy H. Andreotti

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Differential surface stress sensor for detection of chemical and biological species, K. Kang, Marit Nilsen-Hamilton, and Pranav Shrotriya

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Fluorinated Analogs of Malachite Green: Synthesis and Toxicity, George A. Kraus, Insik Jeon, Marit Nilsen-Hamilton, Ahmed M. Awad, Jayeeta Banerjee, and Bahram Parvin

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The ribosome structure controls and directs mRNA entry, translocation and exit dynamics, Ozge Kurkcuoglu, Pemra Doruker, Taner Z. Sen, Andrzej Kloczkowski, and Robert L. Jernigan

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Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism, Wieslawa I. Mentzen, Jianling Peng, Nick Ransom, Basil Nikolau, and Eve Wurtele

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Increasing Complexity of a Diterpene Synthase Reaction with a Single Residue Switch, Dana Morrone, Meimei Xu, D. Bruce Fulton, Mara K. Determan, and Reuben J. Peters

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Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable, Myron Peto, Andrzej Kloczkowski, Vasant Honavar, and Robert L. Jernigan

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Murine Itk SH3 domain, Andrew Severin, D. Bruce Fulton, and Amy H. Andreotti

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Predicting the order in which contacts are broken during single molecule protein stretching experiments, Joanna I. Sulkowska, Andrzej Kloczkowski, Taner Z. Sen, Marek Cieplak, and Robert L. Jernigan

Submissions from 2007

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A Modular Approach for Facile Biosynthesis of Labdane-Related Diterpenes, Anthony Cyr, P. Ross Wilderman, Mara K. Determan, and Reuben J. Peters

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Titin in insect spermatocyte spindle fibers associates with microtubules, actin, myosin and the matrix proteins skeletor, megator and chromator, Lacramioara Fabian, Xuequin Xia, Deepa V. Venkitaramani, Kristen M. Johansen, Jorgen Johansen, Deborah J. Andrew, and Arthur Forer

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Mechanism and Functional Significance of Itk Autophosphorylation, Raji E. Joseph, D. Bruce Fulton, and Amy H. Andreotti

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The Linker between SH2 and Kinase Domains Positively Regulates Catalysis of the Tec Family Kinases, Raji E. Joseph, Lie Min, and Amy H. Andreotti

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A Remote Substrate Docking Mechanism for the Tec Family Tyrosine Kinases, Raji E. Joseph, Lie Min, Ruo Xu, Eli D. Musselman, and Amy H. Andreotti

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Shape-dependent designability studies of lattice proteins, Myron Peto, Andrzej Kloczkowski, and Robert L. Jernigan

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Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices, Myron Peto, Taner Z. Sen, Robert L. Jernigan, and Andrzej Kloczkowski

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16-Aza-ent-beyerane and 16-Aza-ent-trachylobane:  Potent Mechanism-Based Inhibitors of Recombinant ent-Kaurene Synthase from Arabidopsis thaliana, Amab Roy, Frank G. Roberts, P. Ross Wilderman, Ke Zhou, Reuben J. Peters, and Robert M. Coates

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vGNM: a Better Model for Understanding the Dynamics of Proteins in Crystals, Guang Song and Robert L. Jernigan

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A Single Residue Switch Converts Abietadiene Synthase into a Pimaradiene Specific Cyclase, P. Ross Wilderman and Reuben J. Peters

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PIDD: database for Protein Inter-atomic Distance Distributions, Di Wu, Robert Jernigan, and Zhijun Wu

Submissions from 2006

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A mathematical model for the onset of avascular tumor growth in response to the loss of p53 function, Howard A. Levine, Michael W. Smiley, Anna L. Tucker, and Marit Nilsen-Hamilton

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The chromodomain protein, Chromator, interacts with JIL-1 kinase and regulates the structure of Drosophila polytene chromosomes, Uttama Rath, Yun Ding, Huai Deng, Hongying Qi, Xiaomin Bao, Weiguo Zhang, Jack Girton, Jorgen Johansen, and Kristen M. Johansen

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Functional clustering of yeast proteins from the protein-protein interaction network, Taner Z. Sen, Andrzej Kloczkowski, and Robert L. Jernigan

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The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila, Weiguo Zhang, Huai Deng, Xiaomin Bao, Stephanie Lerach, Jack Girton, Jorgen Johansen, and Kristen M. Johansen

Submissions from 2005

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The JIL-1 kinase interacts with lamin Dm0 and regulates nuclear lamina morphology of Drosophila nurse cells, Xiaomin Bao, Weiguo Zhang, Robert Krencik, Huai Deng, Yanming Wang, Jack Girton, Jorgen Johansen, and Kristen M. Johansen

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Prediction of protein secondary structure by mining structural fragment database, Haitao Cheng, Taner Z. Sen, Andrzej Kloczkowski, Dimitris Margaritis, and Robert L. Jernigan

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Protein Promiscuity: Drug Resistance and Native Functions—HIV-1 Case, Ariel Fernandez, Dan S. Tawfik, Ben Berkhout, Rogier W. Sanders, Andrzej Kloczkowski, Taner Z. Sen, and Robert L. Jernigan

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JIL‐1 kinase, a member of the male‐specific lethal (MSL) complex, is necessary for proper dosage compensation of eye pigmentation in Drosophila, Stephanie Lerach, Weiguo Zhang, Huai Deng, Xiaomin Bao, Jack Girton, Jorgen Johansen, and Kristen M. Johansen

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How effective for fold recognition is a potential of mean force that includes relative orientations between contacting residues in proteins?, Sanzo Miyazawa and Robert L. Jernigan

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Mechanism of Action of Escherichia coli Phosphoribosylaminoimidazolesuccinocarboxamide Synthetase, Scott W. Nelson, Daniel Joseph Binkowski, Richard B. Honzatko, and Herbert J. Fromm

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Inferring Ideal Amino Acid Interaction Forms From Statistical Protein Contact Potentials, Piotr Pokarowski, Andrzej Kloczkowski, Robert L. Jernigan, Neha S. Kothari, Maria Pokarowska, and Andrzej Kolinski

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How Do Side Chains Orient Globally in Protein Structures?, Aimin Yan and Robert L. Jernigan

Submissions from 2004

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Origin of Cooperativity in the Activation of Fructose-1,6-bisphosphatase by Mg2+, Scott W. Nelson, Richard B. Honzatko, and Herbert J. Fromm

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Megator, an Essential Coiled-Coil Protein that Localizes to the Putative Spindle Matrix during Mitosis in Drosophila, Hongying Qi, Uttama Rath, Dong Wang, Ying-Zhi Xu, Yun Ding, Weiguo Zhang, Melissa J. Blacketer, Michael R. Paddy, Jack Girton, Jorgen Johansen, and Kristen M. Johansen

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Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching, Michael Y. Tolstorukov, Robert L. Jernigan, and Victor B. Zhurkin

Submissions from 2003

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Native State Proline Isomerization:  An Intrinsic Molecular Switch, Amy H. Andreotti

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Ligand Specificity Modulated by Prolyl Imide Bond Cis/Trans Isomerization in the Itk SH2 Domain:  A Quantitative NMR Study, Patrick J. Breheny, Alain Laederach, D. Bruce Fulton, and Amy H. Andreotti

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Interaction of Tl+ with Product Complexes of Fructose-1,6-bisphosphatase, Jun-yong Choe, Scott W. Nelson, Herbert J. Fromm, and Richard B. Honzatko

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Inhibition of Fructose-1,6-bisphosphatase by a New Class of Allosteric Effectors, Jun-Young Choe, Scott W. Nelson, Kristen L. Arienti, Frank U. Axe, Tassie L. Collins, Todd K. Jones, Rachel D.A. Kimmich, Michael J. Newman, Karl Norvell, William C. Ripka, Suzanne J. Romano, Kevin M. Short, Deborah H. Slee, Herbert J. Fromm, and Richard B. Honzatko

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Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space, Sanzo Miyazawa and Robert L. Jernigan

Submissions from 2002

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Determinants of L-Aspartate and IMP Recognition in Escherichia coli Adenylosuccinate Synthetase, Andrea Gorrell, Wenyan Wang, Eric Underbakke, Zhenglin Hou, Richard B. Honzatko, and Herbert J. Fromm

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Solution and Micelle-Bound Structures of Tachyplesin I and Its Active Aromatic Linear Derivatives, Alain Laederach, Amy H. Andreotti, and D. Bruce Fulton

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Hybrid Tetramers of Porcine Liver Fructose-1,6-bisphosphatase Reveal Multiple Pathways of Allosteric Inhibition, Scott W. Nelson, Richard B. Honzatko, and Herbert J. Fromm

Submissions from 2001

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The N-terminal Segment of Recombinant Porcine Fructose-1,6-bisphosphatase Participates in the Allosteric Regulation of Catalysis, Scott W. Nelson, Feruz T. Kurbanov, Richard B. Honzatko, and Herbert J. Fromm

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Conformational Changes in Pediocin AcH upon Vesicle Binding and Approximation of the Membrane-Bound Structure in Detergent Micelles, Rachel M. Watson, Robert W. Woody, Randolph V. Lewis, D. Scott Bohle, Amy H. Andreotti, Bibek Ray, and Kurt W. Miller

Submissions from 2000

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Mutations in the Hinge of a Dynamic Loop Broadly Influence Functional Properties of Fructose-1,6-bisphosphatase, Scott W. Nelson, Jun-yong Choe, Richard B. Honzatko, and Herbert J. Fromm

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Tryptophan Fluorescence Reveals the Conformational State of a Dynamic Loop in Recombinant Porcine Fructose-1,6-bisphosphatase, Scott W. Nelson, Cristina Valeria Iancu, Jun-yong Choe, Richard B. Honzatko, and Herbert J. Fromm

Submissions from 1990

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Sequence of EMB-1, an mRNA accumulating specifically in embryos of carrot, T. U. Ulrich, Eve Wurtele, and Basil Nikolau

Submissions from 1985

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Characterization of a cDNA Clone Encoding Murine Mitogen-Regulated Protein: Regulation of mRNA Levels in Mortal and Immortal Cell Lines, Craig L. Parfett, Richard T. Hamilton, Brian W. Howell, Dylan R. Edwards, Marit Nilsen-Hamilton, and David T. Denhardt

Submissions from 1983

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Secreted proteins induced by growth factors and inhibitors, Marit Nilsen-Hamilton and Richard T. Hamilton