The Bioinformatics and Computational Biology graduate program emphasizes interdisciplinary training in nine related areas of focus: Bioinformatics, Computational Molecular Biology, Structural and Functional Genomics, Macromolecular Structure and Function, Metabolic and Developmental Networks, Integrative Systems Biology, Information Integration and Data Mining, Biological Statistics, and Mathematical Biology.

Participating Departments

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Theses/Dissertations from 2006

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A modular data analysis pipeline for the discovery of novel RNA motifs , Justin Schonfeld

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Computational studies with ESTs: assembly, SNP detection, and applications in alternative splicing , Jianmin Wang

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Distance-based protein structure modeling , Di Wu

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Use of linkage disequilibrium for quantitative trait loci mapping in livestock , Honghua Zhao

Theses/Dissertations from 2005

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Distance-based NMR structure determination and refinement, Feng Cui

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Multi-scale genetic network inference based on time series gene expression profiles, Pan Du

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Identification of interface residues involved in protein-protein and protein-DNA interactions from sequence using machine learning approaches , Changhui Yan

Theses/Dissertations from 2004

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An agent-based computational model of the evolution of reproductive isolation in populations of digital plants , Nicole Patricia Leahy

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Comparative genomics: multiple genome rearrangement and efficient algorithm development , Shiquan Wu

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Statistical analysis of gene expression profiles, Zhongqi Zhang

Theses/Dissertations from 2003

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Functional divergence and genome evolution of vertebrate protein kinases (kinome), Jianying Gu

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Protein-carbohydrate and protein-protein interactions: using models to better understand and predict specific molecular recognition, Alain Teboho Laederach

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Identification and functional analysis of thylakoid membrane proteome , Yingchun Wang

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The mechanism of integration preference to heterochromatin of yeast retrotransposon Ty5 , Weiwu Xie

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Spliced alignment and its application in Arabidopsis thaliana , Wei Zhu

Theses/Dissertations from 2001

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Studying the replication mechanism of the yeast retrotransposon Ty5 by molecular and computational approaches, Xiang Gao

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Functional divergence and age distribution of vertebrate gene families , Yufeng Wang

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Functional analysis of photosystem I complex by site-directed mutagenesis , Wu Xu