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Submissions from 2012

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Combinatorial Synthesis of and high-throughput protein release from polymer film and nanoparticle libraries, Latrisha K. Petersen, Ana Vianey Chavez-Santoscoy, and Balaji Narasimhan

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Amphiphilic polyanhydride nanoparticles stabilize bacillus anthracis protective antigen, L. K. Petersen, Yashdeep Phanse, Amanda Ellen Ramer-Tait, Michael J. Wannemuehler, and Balaji Narasimhan

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Analyzing cellular internalization of nanoparticles and bacteria by multi-spectral imaging flow cytometry., Yashdeep Phanse, Amanda Ellen Ramer-Tait, Sherree L. Friend, Brenda Rocio Carrillo-Conde, Paul A. Lueth, Carrie Jo Oster, Gregory J. Phillips, Balaji Narasimhan, Michael J. Wannemuehler, and Bryan H. Bellaire

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Dynamic predictive modeling under measured and unmeasured continuous-time stochastic input behavior, Derrick K. Rollins Sr., Dongmei Zhai, Nidhi Bhandari, Amy Roggendorf, Rubal Dua, and Huaiqing Wu

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Self-assembly and biphasic iron-binding characteristics of Mms6, a bacterial protein that promotes the formation of superparamagnetic magnetite nanoparticles of uniform size and shape, Lijun Wang, Tanya Prozorov, Pierre E. Palo, Xunpei Liu, David Vaknin, Ruslan Prozorov, Surya K. Mallapragada, and Marit Nilsen-Hamilton

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Interfacial properties and iron binding to bacterial proteins that promote the growth of magnetite nanocrystals: X-ray reflectivity and surface spectroscopy studies, Wenjie Wang, Wei Bu, Lijun Wang, Pierre E. Palo, Surya K. Mallapragada, Marit Nilsen-Hamilton, and David Vaknin

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Resonance Quenching and Guided Modes Arising from the Coupling of Surface Plasmons with a Molecular Resonance, Wei-Hsun Yeh, Joseph W. Petefish, and Andrew C. Hillier

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Mixed-surface, Lipid-tethered Quantum Dots for Targeting Cells and Tissues, Yanjie Zhang, Amanda Haage, Elizabeth M. Whitley, Ian C. Schneider, and Aaron R. Clapp

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Atom Probe Tomography Characterization of Thin Copper Layers on Aluminum Deposited by Galvanic Displacement, Yi Zhang, Jiahe Ai, Andrew C. Hillier, and Kurt R. Hebert

Submissions from 2011

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Copper Layers Deposited on Aluminum by Galvanic Displacement, Jiahe Ai, S. P. Liu, Newira A. Widharta, Saikat Adhikari, James W. Anderegg, and Kurt R. Hebert

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Direct pore‐level observation of permeability increase in two‐phase flow by shaking, Igor A. Beresnev, William Gaul, and R. Dennis Vigil

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Forced instability of core-annular flow in capillary constrictions, Igor A. Beresnev, William Gaul, and R. Dennis Vigil

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Thickness of residual wetting film in liquid-liquid displacement, Igor A. Beresnev, William Gaul, and R. Dennis Vigil

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An algorithm for optimally fitting a wiener model, Lucas P. Beverlin, Derrick K. Rollins Sr., Nisarg Vyas, and David Andre

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Mannose-functionalized "pathogen-like" polyanhydride nanoparticles target C-type lectin receptors on dendritic cells, Brenda Rocio Carrillo-Conde, Eun-ho Song, Ana Vianey Chavez-Santoscoy, Yashdeep Phanse, Amanda Ellen Ramer-Tait, Nicola L.B. Pohl, Michael J. Wannemuehler, Bryan H. Bellaire, and Balaji Narasimhan

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Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities, Yao Fu, Laura R. Jarboe, and Julie A. Dickerson

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YqhD: A broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals, Laura R. Jarboe

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Engineering inhibitor tolerance for the production of biorenewable fuels and chemicals, Laura R. Jarboe, Ping Lu, and Liam Royce

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Hybrid thermochemical processing: Fermentation of pyrolysis-derived bio-oil, Laura R. Jarboe, Zhiyou Wen, Dong Won Choi, and Robert C. Brown

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Phylogenetic and experimental characterization of an acyl-ACP thioesterase family reveals significant diversity in enzymatic specificity and activity, Fuyuan Jing, David C. Cantu, Jarmila Tvaruzkova, Jay P. Chipman, Basil J. Nikolau, Marna D. Yandeau-Nelson, and Peter J. Reilly

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Reintroducing explicit solvent to a solvent-free coarse-grained model, Seung Ha Kim and Monica H. Lamm

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Engineering ethanologenic Escherichia coli for levoglucosan utilization, Donovan S. Layton, Avanthi Ajjarapu, Dong Won Choi, and Laura R. Jarboe

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Identifying factors controlling protein release from combinatorial biomaterial libraries via hybrid data mining methods, Xue Li, Latrisha K. Petersen, Scott Broderick, Balaji Narasimhan, and Krishna Rajan

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Steam reforming of bio-oil fractions: Effect of composition and stability, Pedro J, Ortiz-toral; Justinus A. Satrio; Robert C. Brown; and Brent H. Shanks

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Improving the stability of a CaO-based sorbent for CO 2 by thermal pretreatment, Dursun Can Ozcan, Brent H. Shanks, and Thomas D. Wheelock

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A Quadrature-Based Kinetic Model for Dilute Non-Isothermal Granular Flows, Alberto Passalacqua, Janine E. Galvin, Prakash Vedula, Christine M. Hrenya, and Rodney O. Fox

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Amphiphilic polyanhydride films promote neural stem cell adhesion and differentiation, Latrisha K. Petersen, Jisun Oh, Donald S. Sakaguchi, Surya K. Mallapragada, and Balaji Narasimhan

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Confocal imaging of laminar and turbulent mixing in a microscale multi-inlet vortex nanoprecipitation reactor, Yanxiang Shi, Rodney O. Fox, and Michael G. Olsen

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Design of a protective single-dose intranasal nanoparticle-based vaccine platform for respiratory infectious diseases, Bret Daniel Ulery, Devender Kumar, Amanda Ellen Ramer-Tait, Dennis W. Metzger, Michael J. Wannemuehler, and Balaji Narasimhan

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Rational design of pathogen-mimicking amphiphilic materials as nanoadjuvants, Bret Daniel Ulery, Latrisha K. Petersen, Yashdeep Phanse, Chang Sun Kong, Scott Broderick, Devender Kumar, Amanda Ellen Ramer-Tait, Brenda Rocio Carrillo-Conde, Krishna Rajan, Michael J. Wannemuehler, Bryan H. Bellaire, Dennis W. Metzger, and Balaji Narasimhan

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A multi-Gaussian quadrature method of moments for simulating high Stokes number turbulent two-phase flows, Aymeric Vie, Christophe Chalons, Rodney O. Fox, Frederique Laurent, and Marc Massot

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Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1, Christopher D. Warner, Rica M. Go, Carolina García-Salinas, Clark Ford, and Peter J. Reilly

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Diffraction-Based Tracking of Surface Plasmon Resonance Enhanced Transmission Through a Gold-Coated Grating, Wei-Hsun Yeh, Joseph W. Petefish, and Andrew C. Hillier

Submissions from 2010

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Application of a combined catalyst and sorbent for steam reforming of methane, Karl O. Albrecht, Justinus A. Satrio, Brent H. Shanks, and Thomas D. Wheelock

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Mechanism of Xylobiose Hydrolysis by GH43 β-Xylosidase, Ian J. Barker, Luis Petersen, and Peter J. Reilly

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Hierarchically Ordered Montmorillonite Block Copolymer Brushes, Ross Eric Behling, Lynn M. Wolf, and Eric W. Cochran

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Tracking chemical processing pathways in combinatorial polymer libraries via data mining, Scott Broderick, Joseph R. Nowers, Balaji Narasimhan, and Krishna Rajan

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ThYme: a database for thioester-active enzymes, David C. Cantu, Yingfei Chen, Matthew L. Lemons, and Peter J. Reilly

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Kinetic Modeling of Nanoprecipitation using CFD Coupled with a Population Balance, Janine C. Cheng and Rodney O. Fox

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Sulfated zirconia modified SBA-15 catalysts for cellobiose hydrolysis, Volkan Degirmenci, Deniz Uner, Basak Cinlar, Brent H. Shanks, Aysen Yilmaz, Rutget A. van Santen, and Emiel J. M. Hensen

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Quadrature-Based Moment Model for Moderately Dense Polydisperse Gas-Particle Flows, Rodney O. Fox and Prakash Vedula

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Mechanical Integration of Actin and Adhesion Dynamics in Cell Migration, Margaret L. Gardel, Ian C. Schneider, Yvonne Aratyn-Schaus, and Clare M. Waterman

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Theoretical Study of the Pyrolysis of Methyltrichlorosilane in the Gas Phase. 3. Reaction Rate Constant Calculations, Yingbin Ge, Mark S. Gordon, Francine Battaglia, and Rodney O. Fox

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Self-assembly of CdTe tetrapods into network monolayers at the air/water interface, Matthew Dave Goodman, Lei Zhao, Karen A. DeRocher, Jun Wang, Surya K. Mallapragada, and Zhiqun Lin

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Book Review: Controlled and Living Polymerizations: From Mechanisms to Applications, Jennifer M. Heinen

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Combined Electrochemical Surface Plasmon Resonance for Angle Spread Imaging of Multielement Electrode Arrays, Andrew C. Hillier and Chang Hoon Choi

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Micro-recanalization in a biodegradable graft for reconstruction of the vas deferens is enhanced by sildenafil citrate, Peter A. Holoch, Surya K. Mallapragada, Carlos Atico Ariza, Thomas S. Griffith, Barry R. DeYoung, and Moshe Wald

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Metabolic Engineering for Production of Biorenewable Fuels and Chemicals: Contributions of Synthetic Biology, Laura R. Jarboe, Xueli Zhang, Xuan Wang, Jonathan C. Moore, K. T. Shanmugam, and Lonnie O. Ingram

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Statistical model of defects in Al-H system, Min Ji, Cai-Zhuang Wang, Kai-Ming Ho, Saikat Adhikari, and Kurt R. Hebert

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Multiscale Modeling of TiO2 Nanoparticle Production in Flame Reactors: Effect of Chemical Mechanism, Maulik Mehta, Yonduck Sung, Venkatramanan Raman, and Rodney O. Fox

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Symmetry Transition in Thin Films of Diblock Copolymer/Homopolymer Blends, Vindhya Mishra, Su-Mi Hur, Eric W. Cochran, Gila E. Stein, Glenn H. Fredrickson, and Edward J. Kramer

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Metabolic analysis of wild-type Escherichia coli and a Pyruvate Dehydrogenase Complex (PDHC)-deficient derivative reveals the role of PDHC in the fermentative metabolism of glucose, Abhishek Murarka, James M. Clomburg, Sean Moran, Jacqueline V. Shanks, and Ramon Gonzalez

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Utilizing Protein-Lean Coproducts from Corn Containing Recombinant Pharmaceutical Proteins for Ethanol Production, Ilankovan Paraman, Lorena Beatriz Moeller, M. Paul Scott, Kan Wang, Charles E. Glatz, and Lawrence A. Johnson

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Myosin II activity regulates vinculin recruitment to focal adhesions through FAK-mediated paxillin phosphorylation, Ana M. Pasapera, Ian C. Schneider, Erin Rericha, David D. Schlaepfer, and Clare M. Waterman

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Novel, high throughput method to study in vitro protein release from polymer nanospheres, L. K. Petersen, C. K. Sackett, and Balaji Narasimhan

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Molecular Mechanism of the Glycosylation Step Catalyzed by Golgi α-Mannosidase II: A QM/MM Metadynamics Investigation, Luis Petersen, Albert Ardèvol, Carme Rovira, and Peter J. Reilly

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Molecular dynamics simulation of fractal aggregate diffusion, Gaurav Pranami, Monica H. Lamm, and R. Dennis Vigil

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An extended data mining method for identifying differentially expressed assay-specific signatures in functional genomic studies, Derrick K. Rollins Sr. and Ai-ling Teh

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Conversion of biorenewable feedstocks: New challenges in heterogeneous catalysis, Brent H. Shanks

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Effect of mesoporosity on thermal and mechanical properties of polystyrene/silica composites, Melissa A. Ver Meer, Balaji Narasimhan, Brent H. Shanks, and Surya K. Mallapragada

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Tertiary Structure and Characterization of a Glycoside Hydrolase Family 44 Endoglucanase from Clostridium acetobutylicum, Christopher D. Warner, Julie A. Hoy, Taran C. Shilling, Michael J. Linnen, Nathaniel D. Ginder, Clark Ford, Richard B. Honzatko, and Peter J. Reilly

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Wavelength Tunable Surface Plasmon Resonance-Enhanced Optical Transmission Through a Chirped Diffraction Grating, Wei-Hsun Yeh, Justin Kleingartner, and Andrew C. Hillier

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Sensing polymer/DNA polyplex dissociation using quantum dot fluorophores, Bingqi Zhang, Yanjie Zhang, Surya K. Mallapragada, and Aaron R. Clapp

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Three-Dimensional Atom Probe Tomography of Oxide, Anion, and Alkanethiolate Coatings on Gold, Yi Zhang and Andrew C. Hillier

Submissions from 2009

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Influence of Graft Density on Kinetics of Surface-Initiated ATRP of Polystyrene from Montmorillonite, Ross Eric Behling, Bryce A. Williams, Brandy L. Staade, Lynn M. Wolf, and Eric W. Cochran

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Mechanisms of Aqueous Extraction of Soybean Oil, K. A. Campbell and Charles E. Glatz

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A microscale multi-inlet vortex nanoprecipitation reactor: Turbulence measurement and simulation, Janine C. Cheng, Michael G. Olsen, and Rodney O. Fox

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Optimal Moment Sets for Multivariate Direct Quadrature Method of Moments, Rodney O. Fox

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A comparative study of macroporous metal oxides synthesized via a unified approach, Sikander H. Hakim and Brent H. Shanks

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A Model for Coupled Electrical Migration and Stress-Driven Transport in Anodic Oxide Films, Kurt R. Hebert and Jerrod E. Houser

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Twisting of glycosidic bonds by hydrolases, Glenn P. Johnson, Luis Petersen, Alfred D. French, and Peter J. Reilly

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Turbulence in a microscale planar confined impinging-jets reactor, Ying Liu, Michael G. Olsen, and Rodney O. Fox

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Validation of Two-Fluid Simulations of a Pseudo-Two-Dimensional Bubble Column with Uniform and Nonuniform Aeration, Sarah M. Monahan and Rodney O. Fox

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Mechanism of Cellulose Hydrolysis by Inverting GH8 Endoglucanases: A QM/MM Metadynamics Study, Luis Petersen, Albert Ardèvol, Carme Rovira, and Peter J. Reilly

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EGF-induced Contraction Regulates Paxillin Phosphorylation to Temporally Separate Traction Generation from De-adhesion, Ian C. Schneider, Cristen K. Hays, and Clare M. Waterman

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Epidermal growth factor-induced contraction regulates paxillin phosphorylation to temporally separate traction generation from de-adhesion, Ian C. Schneider, Cristen K. Hays, and Clare M. Waterman

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Early microrecanalization of vas deferens following biodegradable graft implantation in bilaterally vasectomized rats, Christopher M. Simons, Barry R. De Young, Thomas S. Griffith, Timothy L. Ratliff, Erin Jones, Surya K. Mallapragada, and Moshe Wald

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Combinatorial/high throughput methods for the determination of polyanhydride phase behavior, Jon B. Thorstenson, Latrisha Kay Petersen, and Balaji Narasimhan

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Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity, Tianjiao Wang, Julie A. Hoy, Monica H. Lamm, and Marit Nilsen-Hamilton

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Purification and Characterization of a 44-kDa Recombinant Collagen I α 1 Fragment from Corn Grain, Cheng Zhang, Julio Baez, and Charles E. Glatz

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Effect of electrolytes on CO-water mass transfer, Haiyang Zhu, Brent H. Shanks, and Theodore J. Heindel

Submissions from 2008

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Participation of Aluminum Hydride in the Anodic Dissolution of Aluminum in Alkaline Solutions, Saikat Adhikari and Kurt R. Hebert

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Formation of Aluminum Hydride during Alkaline Dissolution of Aluminum, Saikat Adhikari, Jinju Lee, and Kurt R. Hebert

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Development of a CaO-based CO2 sorbent with improved cyclic stability, Karl O. Albrecht, Kyle S. Wagenbach, Justinus A. Satrio, Brent H. Shanks, and Thomas D. Wheelock

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Theory and computation show that Asp463 is the catalytic proton donor in human endoplasmic reticulum α-(1→2)-mannosidase I, David C. Cantú, Wim Nerinckx, and Peter J. Reilly

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PH- and temperature-dependent phase behavior of a PEO-PPO-PEO-based pentablock copolymer in aqueous media, Michael Duane Determan, Liang Guo, Chieh-Tsung Lo, Papannan Thiyagarajan, and Surya K. Mallapragada

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Conditional statistics of passive-scalar mixing in a confined wake flow, Hua Feng, Michael G. Olsen, Rodney O. Fox, and James C. Hill

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Cellulose conversion in dry grind ethanol plants, Michael Ladisch, Bruce Dale, Wally Tyner, Nathan Mosier, Youngmi Kim, Michael Cotta, Bruce Dien, Hans Blaschek, Edmund Laurenas, Brent H. Shanks, John Verkade, Chad Schell, and Gene Petersen

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Spatiotemporal Compound Wavelet Matrix Framework for Multiscale/Multiphysics Reactor Simulation: Case Study of a Heterogeneous Reaction/Diffusion System, Sudib K. Mishra, Krishna Muralidharan, S. Pannala, Srdjan Simunovic, C. Stuart Daw, Phani Nukala, Rodney O. Fox, Pierre A. Deymier, and George N. Frantziskonis

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Single-Molecule Dendrimer-Hydrocarbon Interaction, Karthikeyan Pasupathy, Nicholas W. Suek, John L. Lyons, Justin Ching, Aaron Jones, Qi Lu, Monica H. Lamm, and Pu Chun Ke

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Surface Plasmon Resonance Enhanced Transmission of Light through Gold-Coated Diffraction Gratings, Bipin K. Singh and Andrew C. Hillier

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Nanoparticle ordering via functionalized block copolymers in solution, Rastko Sknepnek, Joshua A. Anderson, Monica H. Lamm, Jorg Schmalian, and Alex Travesset

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Computer simulation of architectural and molecular weight effects on the assembly of amphiphilic linear-dendritic block copolymers in solution, Nicholas W. Suek and Monica H. Lamm

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Convergence of Agriculture and Energy: III. Considerations in Biodiesel Production, Jon Van Gerpen, Allan Gray, and Brent H. Shanks

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Enhancing CO-water mass transfer by functionalized MCM41 nanoparticles, Haiyang Zhu, Brent H. Shanks, and Theodore J. Heindel

Submissions from 2007

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Conditional statistics for passive-scalar mixing in a confined rectangular turbulent jet, H. Feng, Michael G. Olsen, Rodney O. Fox, and James C. Hill

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Theoretical Study of the Pyrolysis of Methyltrichlorosilane in the Gas Phase. 1. Thermodynamics, Yingbin Ge, Mark S. Gordon, Francine Battaglia, and Rodney O. Fox

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Theoretical Study of the Pyrolysis of Methyltrichlorosilane in the Gas Phase. 2. Reaction Paths and Transition States, Yingbin Ge, Mark S. Gordon, Francine Battaglia, and Rodney O. Fox

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Puckering Coordinates of Monocyclic Rings by Triangular Decomposition, Anthony D. Hill and Peter J. Reilly

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The fate of β-d-mannopyranose after its formation by endoplasmic reticulum α-(1→2)-mannosidase I catalysis, Chandrika Mulakala, Wim Nerinckx, and Peter J. Reilly