Structural study of yeast SNARE proteins on membrane by EPR

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2007-01-01
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Zhang, Yinghui
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Yeon-Kyun Shin
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Biochemistry, Biophysics and Molecular Biology

The Department of Biochemistry, Biophysics, and Molecular Biology was founded to give students an understanding of life principles through the understanding of chemical and physical principles. Among these principles are frontiers of biotechnology such as metabolic networking, the structure of hormones and proteins, genomics, and the like.

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The Department of Biochemistry and Biophysics was founded in 1959, and was administered by the College of Sciences and Humanities (later, College of Liberal Arts & Sciences). In 1979 it became co-administered by the Department of Agriculture (later, College of Agriculture and Life Sciences). In 1998 its name changed to the Department of Biochemistry, Biophysics, and Molecular Biology.

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1959–present

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  • Department of Biochemistry and Biophysics (1959–1998)

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Biochemistry, Biophysics and Molecular Biology
Abstract

Membrane fusion is a basic biophysical process involved in cell's physiological activities. The value of studying the exocytosis of mammalian cells and yeast cells lies in that a highly conserved SNARE (Soluble N-ethylmaleimide-sensitive factor attachment protein receptor) protein super family mediates this process and is proposed to be the core protein machinery for the membrane. The SNARE proteins located on plasma membrane and vesicle membrane are assembled together to form a trans-SNARE bridging two separate membranes and initiating membrane.;My research centers on how SNARE assembly involved in yeast cells' exocytosis promotes membrane fusion between yeast vesicle and plasma membrane. Site-directed spin labeling (SDSL) and electron paramagnetic resonance (EPR) are well established techniques in membrane protein structural study. Fluorescent labeled Lipid mixing assay is employed to test the functional activity of SNARE. The data from trans-SNARE assembly on membrane indicates its potential catalyst role in membrane fusion; The transmembrane organization of neural syntaxin-analogue Sso1p is a well defined alpha helix across membrane based on accessibility profile of magnetic reagents; Transmembrane domain of Sso1p tends to form oligomers of stoichiometries ranging from 3 to 6 in the membrane, which likely act as a scaffold of formation and clustering of multimeric trans-SNARE supra complex prior to lipid mixing; Sso1p TMD conformational change involved in the transition from trans- to cis-SNARE is also disclosed by EPR spectra, shedding light on the structural and temporal relationship between SNARE assembly intermediates and substeps of membrane fusion.

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Mon Jan 01 00:00:00 UTC 2007