OmicsViz: Cytoscape plug-in for visualizing omics data across species
Date
2008-01-01
Authors
Xia, Tian
Dickerson, Julie
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Bioinformatics and Computational Biology
The Bioinformatics and Computational Biology (BCB) Program at Iowa State University is an interdepartmental graduate major offering outstanding opportunities for graduate study toward the Ph.D. degree in Bioinformatics and Computational Biology. The BCB program involves more than 80 nationally and internationally known faculty—biologists, computer scientists, mathematicians, statisticians, and physicists—who participate in a wide range of collaborative projects.
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Electrical and Computer EngineeringBioinformatics and Computational Biology
Abstract
Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different experimental protocols allow users to comparatively analyze the omics data. The data can also be visualized in parallel-coordinate plots.
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This article is from Bioinformatics 24 (2008): 2557–2558, doi:10.1093/bioinformatics/btn47. Posted with permission.
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Tue Jan 01 00:00:00 UTC 2008