Date of Award
Master of Science
Genetics, Development and Cell Biology
A total of 3545 splicing-related proteins in 10 plant species are identified by the sequence comparison and Markov Clustering method (OrthoMCL), including 412 proteins of Arabidopsis thaliana (At), 579 proteins of Glycine max (Gm), 248 proteins of Lotus japonicus (Lj), 296 proteins of Medicago truncatula (Mt), 316 proteins of Rice Oryza sativa (Os), 330 proteins of Physcomitrella patens (Pp), 430 proteins of Populus trichocarpa (Pt), 307 proteins of Sorghum bicolour (Sb), 270 proteins of Vitis vinifera (Vv), and 365 proteins of Zea mays (Zm). Classification and detailed information on common intron positions, gene duplications, gene structures, domain structures, and chromosome locations are accessible on the Splicing-Related Genes Database (SRGD) web site.
Chen, Liping, "Identification and survey of pre-mRNA splicing-related proteins in 10 plant species" (2011). Graduate Theses and Dissertations. 10237.