Metabolic engineering strategies for high-level production of aromatic amino acid pathway derivatives in Saccharomyces cerevisiae

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2017-01-01
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Suastegui Pastrana, Jose
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Zengyi Shao
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Chemical and Biological Engineering

The function of the Department of Chemical and Biological Engineering has been to prepare students for the study and application of chemistry in industry. This focus has included preparation for employment in various industries as well as the development, design, and operation of equipment and processes within industry.Through the CBE Department, Iowa State University is nationally recognized for its initiatives in bioinformatics, biomaterials, bioproducts, metabolic/tissue engineering, multiphase computational fluid dynamics, advanced polymeric materials and nanostructured materials.

History
The Department of Chemical Engineering was founded in 1913 under the Department of Physics and Illuminating Engineering. From 1915 to 1931 it was jointly administered by the Divisions of Industrial Science and Engineering, and from 1931 onward it has been under the Division/College of Engineering. In 1928 it merged with Mining Engineering, and from 1973–1979 it merged with Nuclear Engineering. It became Chemical and Biological Engineering in 2005.

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1913 - present

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  • Department of Chemical Engineering (1913–1928)
  • Department of Chemical and Mining Engineering (1928–1957)
  • Department of Chemical Engineering (1957–1973, 1979–2005)
    • Department of Chemical and Biological Engineering (2005–present)

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Chemical and Biological Engineering
Abstract

Due to its robustness, genetic tractability, and industrial relevance, the budding yeast Saccharomyces cerevisiae was selected as study model of the aromatic amino acid biosynthetic pathway. This pathway houses a wide diversity of economically important metabolites ranging from polymer precursors to pain-management drugs, whose productions have been highly sought-after in biotechnological research. However, tight regulations at the transcriptional, translational, and allosteric levels surround the aromatic amino acid pathway, protecting the microbial factories (e.g. S. cerevisiae) from unnecessary energy expenditures. By making use of computational metabolic engineering tools such as Flux Balance Analysis and Metabolic Flux Analysis, together with fast and reliable synthetic biology techniques, the flux into the aromatic amino acid pathway was exploited. Initially, the flux distribution in the central carbon metabolism was studied through 13C-metabolic flux analysis and carbon tracing experiments. Important insights regarding the partition between glycolysis and the pentose phosphate pathway were obtained and correlated with the production of aromatic amino acid derivatives. For the first time, the pentafunctional enzyme, ARO1, composing the core of the shikimic acid pathway was subjected to site-directed mutagenesis to reveal its active domains. This resulted in the development of new variants with disrupted activities specifically designed for increasing production of the two target molecules, namely, muconic acid and shikimic acid. Further analysis with OptForce simulations revealed that overexpressing the ribose-5-phosphate ketol-isomerase gene, RKI1, can enhance carbon funneling into the aromatic amino acid pathway. A multilevel engineering strategy was established to explore novel transcriptional regulators that tightly control the carbon flux into the pathway. Deleting the gene RIC1, involved in efficient protein localization of trans-Golgi network proteins, increased the titers of shikimic acid and muconic acid. These non-intuitive interventions, in combination with the previous genetic platforms, increased the production titers over 3-fold compared to the base strains. The shikimic acid strains produced 1.9 g L-1, while muconic acid and intermediates were accumulated up to 1.6 g L-1, both being the highest reported in S. cerevisiae, in batch fermentations. Future research should focus on devising more dynamic genome engineering strategies that rely on modulating the activity of essential genes while ensuring a good compromise with biomass formation.

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Sun Jan 01 00:00:00 UTC 2017