Optimal population value selection: A population-based selection strategy for genomic selection

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2016-01-01
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Goiffon, Matthew
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Lizhi Wang
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Industrial and Manufacturing Systems Engineering
The Department of Industrial and Manufacturing Systems Engineering teaches the design, analysis, and improvement of the systems and processes in manufacturing, consulting, and service industries by application of the principles of engineering. The Department of General Engineering was formed in 1929. In 1956 its name changed to Department of Industrial Engineering. In 1989 its name changed to the Department of Industrial and Manufacturing Systems Engineering.
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Industrial and Manufacturing Systems Engineering
Abstract

In order to feed the world’s growing population, an interdisciplinary effort is needed. In this thesis, operations research tools of mathematical modeling, optimization, and simulation are used to improve an existing plant breeding method, genomic selection. To do this, a new method, called optimal population value (OPV) selection, is proposed. In this paper, OPV selection is first defined as an optimization problem that selects a breeding population using a population metric, instead of individual metrics. Then, OPV selection is thoroughly tested in a simulation study against the existing methods of genomic selection, weighted genomic selection, and optimal haploid value selection. From the results of the simulation study, up to an 8.3%, or 0.58 base standard deviations, greater mean response can be expected than when using traditional genomic selection. These results suggest that population-based selection methods are a promising future research direction.

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Fri Jan 01 00:00:00 UTC 2016