Campus Units

Biochemistry, Biophysics and Molecular Biology, Roy J. Carver Department of, Computer Science, Electrical and Computer Engineering, Genetics, Development and Cell Biology, Statistics

Document Type

Book Chapter

Publication Version

Accepted Manuscript

Publication Date

2007

Journal or Book Title

Concepts in Plant Metabolomics

First Page

145

Last Page

157

DOI

10.1007/978-1-4020-5608-6_10

Abstract

MetNet (http://metnetdb.org) is an emerging open-source software platform for exploration of disparate experimental data types and regulatory and metabolic networks in the context of Arabidopsis systems biology. The MetNet platform features graph visualization, interactive displays, graph theoretic computations for determining biological distances, a unique multivariate display and statistical analysis tool, graph modeling using the open source statistical analysis language, R, and versatile text mining. The use of these tools is illustrated with data from the bio1 mutant of Arabidopsis.

Comments

This is a manuscript of a chapter from Wurtele, Eve, Ling Li, Dan Berleant, Dianne Cook, Julie Dickerson, Jing Ding, Heike Hofmann et al. "MetNet: Systems Biology Tools for Arabidopsis." Concepts in Plant Metabolomics (2007): 145-157. doi: 10.1007/978-1-4020-5608-6_10. Posted with permission.

Copyright Owner

Springer

Language

en

File Format

application/pdf

Published Version

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