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Submissions from 2013

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Terrestrial distribution of pond-breeding salamanders around an isolated wetland, David E. Scott, Mark J. Komoroski, Dean A. Croshaw, and Philip M. Dixon

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Transfer of Learning in Mathematics, Science, and Reading among Students in Turkey: A Study Using 2009 PISA Data, Mack C. Shelley and Atila Yildirim

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Appropriateness of the probability approach with a nutrient status biomarker to assess population inadequacy: a study using vitamin D, Christine L. Taylor, Alicia L. Carriquiry, Regan Bailey, Christopher T. Sempos, and Elizabeth A. Yetley

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Urinary Excretion of Sodium, Potassium, and Chloride, but Not Iodine, Varies by Timing of Collection in a 24-Hour Calibration Study, Chia-Yih Wang, Mary E. Cogswell, Catherine M. Loria, Te-Ching Chen, Christine M. Pfeiffer, Christine A. Swanson, Kathleen L. Caldwell, Cria G. Perrine, Alicia L. Carriquiry, Kiang Liu, Christopher T. Sempos, Cathleen Gillespie, and Vicki L. Burt

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Association between Usual Sodium and Potassium Intake and Blood Pressure and Hypertension among U.S. Adults: NHANES 2005–2010, Zefeng Zhang, Mary E. Cogswell, Cathleen Gillespie, Jing Fang, Fleetwood Loustalot, Shifan Dai, Alicia L. Carriquiry, Elena V. Kuklina, Yuling Hong, Robert Merritt, and Quanhe Yang

Submissions from 2012

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Sodium and potassium intakes among US adults: NHANES 2003–2008, Mary E. Cogswell, Zefeng Zhang, Alicia L. Carriquiry, Janelle P. Gunn, Elena V. Kuklina, Sharon H. Sayday, Quanhe Yang, and Alanna J. Moshfegh

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Accelerated maximum likelihood parameter estimation for stochastic biochemical systems, Bernie J. Daigle Jr., Min K. Roh, Linda R. Petzold, and Jarad Niemi

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Identifying Sources of Error in Surveys of Devils Hole Pupfish (Cyprinodon diabolis), Maria Dzul, Michael C. Quist, Stephen J. Dinsmore, Philip M. Dixon, Michael R. Bower, Kevin P. Wilson, and D. Bailey Gaines

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Optimal predictive design augmentation for spatial generalised linear mixed models, Evangelos Evangelou and Zhengyuan Zhu

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When “Humanitarianism” Becomes “Development”: The Politics of International Aid in Syria's Palestinian Refugee Camps, Nell Gabiam

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Borrowing Information Across Genes and Experiments for Improved Error Variance Estimation in Microarray Data Analysis, Tieming Ji, Peng Liu, and Dan Nettleton

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Some theory for propensity-score-adjustment estimators in survey sampling, Jae Kwang Kim and Minsun Kim Riddles

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Use of legume green manures as nitrogen sources for corn production, Matt Liebman, Rhonda L. Graef, Daniel Nettleton, and Cynthia A. Cambardella

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Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq), Sanzhen Liu, Cheng-Ting Yeh, Ho Man Tang, Dan Nettleton, and Patrick S. Schnable

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The importance of distinct modeling strategies for gene and gene-specific treatment effects in hierarchical models for microarray data, Steven P. Lund and Dan Nettleton

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Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates, Steven P. Lund, Dan Nettleton, Davis J. McCarthy, and Gordon K. Smyth

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Bootstrapping for Significance of Compact Clusters in Multidimensional Datasets, Ranjan Maitra, Volodymyr Melnykov, and Soumendra N. Lahiri

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Ethnic Interest Groups in American Foreign Policy, James M. McCormick

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MixSim: An R Package for Simulating Data to Study Performance of Clustering Algorithms, Volodymyr Melnykov, Wei-Chen Chen, and Ranjan Maitra

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Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents, Anja Paschold, Yi Jia, Caroline Marcon, Steve Lund, Nick B. Larson, Cheng-Ting Yeh, Stephan Ossowski, Christa Lanz, Dan Nettleton, Patrick S. Schnable, and Frank Hochholdinger

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Ontogeny of the Maize Shoot Apical Meristem, Elizabeth M. Takacs, Jie Li, Chuanlong Du, Lalit Ponnala, Diane Janick-Buckner, Jianming Yu, Gary J. Muehlbauer, Patrick S. Schnable, Marja C. P. Timmermans, Qi Sun, Dan Nettleton, and Michael J. Scanlon

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Interdisciplinary undergraduate learning modules in gerontechnology, H.I. Yang, P. Martin, D. Satterfield, Mack C. Shelley, J. Wong, and C.K. Chang

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An efficient method of estimation for longitudinal surveys with monotone missing data, Ming Zhou and Jae Kwang Kim

Submissions from 2011

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Evaluation of catastrophic musculoskeletal injuries in Thoroughbreds and Quarter Horses at three Midwestern racetracks, Andrea L. Beisser, Scott R. McClure, Chong Wang, Keith Soring, Rudy Garrison, and Bryce Peckham

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A nonstationary nonparametric Bayesian approach to dynamically modeling effective connectivity in functional magnetic resonance imaging experiments, Sourabh Bhattacharya and Ranjan Maitra

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Election Forensics and the 2004 Venezuelan Presidential Recall Referendum as a Case Study, Alicia L. Carriquiry

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Effect of cold compression therapy on postoperative pain, swelling, range of motion, and lameness after tibial plateau leveling osteotomy in dogs, Kevin A. Drygas, Scott R. McClure, Robert L. Goring, Antonio Pozzi, Sheilah A. Robertson, and Chong Wang

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Estimation and prediction for spatial generalized linear mixed models using high order Laplace approximation, Evangelos Evangelou, Zhengyuan Zhu, and Richard L. Smith

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Associations between ozone and morbidity using the Spatial Synoptic Classification system, Adel F. Hanna, Karin B. Yeatts, Aijun Xiu, Zhengyuan Zhu, Richard L. Smith, Neil N. Davis, Kevin D. Talgo, HSBC Finance Corporation, Peter J. Robinson, Qingyu Meng, and Joseph P. Pinto

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Distinct Peripheral Blood RNA Responses to Salmonella in Pigs Differing in Salmonella Shedding Levels: Intersection of IFNG, TLR and miRNA Pathways, Ting-Hua Huang, Jolita J. Uthe, Shawn M. D. Bearson, Cumhur Yusuf Demirkale, Dan Nettleton, Susan Knetter, Curtis Christian, Amanda E. Ramer-Tait, Michael J. Wannemeuhler, and Christopher K. Tuggle

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Parametric fractional imputation for missing data analysis, Jae Kwang Kim

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Variance estimation for nearest neighbor imputation for US Census long form data, Jae Kwang Kim, Wayne Fuller, and William R. Bell

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A Semiparametric Estimation of Mean Functionals With Nonignorable Missing Data, Jae Kwang Kim and Cindy Long Yu

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Replication variance estimation under two-phase sampling, Jae Kwang Kim and Cindy Long Yu

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The Obama Presidency: A Foreign Policy of Change?, James M. McCormick

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CARP: Software for Fishing Out Good Clustering Algorithms, Volodymyr Melnykov and Ranjan Maitra

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Accounting for spot matching uncertainty in the analysis of proteomics data from two-dimensional gel electrophoresis, Volodymyr Melnykov, Ranjan Maitra, and Dan Nettleton

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Work in Progress - Preparation Creating Effective Faculty of Engineering: A Technological Literacy Approach, Mani Mina, Diane T. Rover, and Mack C. Shelley

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Quantitative and Temporal Definition of the Mla Transcriptional Regulon During Barley–Powdery Mildew Interactions, Matthew J. Moscou, Nick Lauter, Rico A. Caldo, Dan Nettleton, and Roger P. Wise

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Long-range dependence analysis of Internet traffic, Cheolwoo Park; Google, Inc.; Long Le; J. S. Marron; Juhyun Park; Vladas Pipiras; F. D. Smith; Richard L. Smith; Michele Trovero; and Zhengyuan Zhu

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Modeling Spectral–Temporal Data From Point Source Events, Monica Marie Reising, Max D. Morris, Stephen B. Vardeman, and Shawn Higbee

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A Novel Interdisciplinary Course in Gerontechnology for Disseminating Computational Thinking, Hen-I Yang, Peter Martin, Debra Satterfield, Ryan Babbitt, Johnny S. Wong, Mack C. Shelley, and Carl K. Chang

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Contributions of enriched cereal-grain products, ready-to-eat cereals, and supplements to folic acid and vitamin B-12 usual intake and folate and vitamin B-12 status in US children: National Health and Nutrition Examination Survey (NHANES), 2003–2006, Lorraine F. Yeung, Mary E. Cogswell, Alicia L. Carriquiry, Lynn B. Bailey, Christine M. Pfeiffer, and Robert J. Berry

Submissions from 2010

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Effect of temperature and nutrient concentration on the growth of six species of sooty blotch and flyspeck fungi, Jean C. Batzer, Sandra Hernandez Rincon, Daren S. Mueller, Benjamin J. Petersen, Fabien Le Corronc, Patricia S. McManus, Philip M. Dixon, and Mark Gleason

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Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin, Ceren Ciraci, Christopher K. Tuggle, Michael J. Wannemeuhler, Dan Nettleton, and Susan J. Lamont

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Adolescents’ health behaviors and obesity: Does race affect this epidemic?, Bernice A. Dodor, Mack C. Shelley II, and Cheryl O. Hausafus

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Three-Phase Model Harmonizes Estimates of the Maximal Suppression of Parathyroid Hormone by 25-Hydroxyvitamin D in Persons 65 Years of Age and Older, Ramon A. Durazo-Arvizu, Bess Dawson-Hughes, Christopher T. Sempos, Elizabeth A. Yetley, Anne C. Looker, Guichan Cao, Susan S. Harris, Vicki L. Burt, Alicia L. Carriquiry, and Mary Frances Picciano

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High-Resolution Genotyping via Whole Genome Hybridizations to Microarrays Containing Long Oligonucleotide Probes, Yan Fu, Nathan M. Springer, Kai Ying, Cheng-Ting Yeh, A. Leonardo Iniguez, Todd Richmond, Wei Wu, Brad Barbazuk, Dan Nettleton, Jeff Jeddeloh, and Patrick S. Schnable

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Calibration estimation using exponential tilting in sample surveys, Jae Kwang Kim

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Calibration Estimation in Survey Sampling, Jae Kwang Kim and Mingue Park

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A Hidden Markov Model Approach to Testing Multiple Hypotheses on a Tree-Transformed Gene Ontology Graph, Kun Liang and Dan Nettleton

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A re-defined and generalized percent-overlap-of-activation measure for studies of fMRI reproducibility and its use in identifying outlier activation maps, Ranjan Maitra

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Simulating Data to Study Performance of Finite Mixture Modeling and Clustering Algorithms, Ranjan Maitra and Volodymyr Melnykov

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A k-mean-directions Algorithm for Fast Clustering of Data on the Sphere, Ranjan Maitra and Ivan Peter Ramler

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Synthetic Magnetic Resonance Imaging Revisited, Ranjan Maitra and John J. Riddles

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Finite mixture models and model-based clustering, Volodymyr Melnykov and Ranjan Maitra

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Structural Analysis of Factors Influencing the Adjustment Behaviors of Korean Children in the U.S., Sunjin Oh and Mack C. Shelley

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Sustainability of Glyphosate-based Weed Management: The Benchmark Study, Michael D. Owen, Philip M. Dixon, David R. Shaw, Stephen C. Weller, Bryan G. Young, Robert G. Wilson, and David L. Jordan

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Retribution and Restitution in Locke’s Theory of Punishment, Alex Tuckness

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Academic Success for STEM and Non-STEM Majors, Donald F. Whalen and Mack C. Shelley

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Folic acid source, usual intake, and folate and vitamin B-12 status in US adults: National Health and Nutrition Examination Survey (NHANES) 2003–2006, Quanhe Yang, Mary E. Cogswell, Heather C. Hamner, Alicia L. Carriquiry, Christine M. Pfeiffer, and Robert J. Berry

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Estimation and Prediction of a Class of Convolution-Based Spatial Nonstationary Models for Large Spatial Data, Zhengyuan Zhu and Yichao Wu

Submissions from 2009

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Microdissection of Shoot Meristem Functional Domains, Lionel Brooks III, Josh Strable, Xiaolan Zhang, Kazuhiro Ohtsu, Ruilian Zhou, Ananda Sarkar, Sarah Hargreaves, Robert J. Elshire, Douglas Eudy, Teresa Pawlowska, Doreen Ware, Diane Janick-Buckner, Brent Buckner, Marja C. P. Timmermans, Patrick S. Schnable, Dan Nettleton, and Michael J. Scanlon

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Predicted contribution of folic acid fortification of corn masa flour to the usual folic acid intake for the US population: National Health and Nutrition Examination Survey 2001–2004, Heather C. Hamner, Joseph Mulinare, Mary E. Cogswell, Alina L. Flores, David Joseph Boyle, Coleen A. Boyle, Christine E. Prue, Chia-Yih Wang, Alicia L. Carriquiry, and Owen Devine

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Loss of RNA–Dependent RNA Polymerase 2 (RDR2) Function Causes Widespread and Unexpected Changes in the Expression of Transposons, Genes, and 24-nt Small RNAs, Yi Jia, Damon R. Lisch, Kazuhiro Ohtsu, Michael J. Scanlon, Dan Nettleton, and Patrick S. Schnable

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Calibration estimation using empirical likelihood in survey sampling, Jae Kwang Kim

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A unified approach to linearization variance estimation from survey data after imputation for item nonresponse, Jae Kwang Kim and J. N. K. Rao

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Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa, Xuehui Li, Yanling Wei, Dan Nettleton, and E. Charles Brummer

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Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant, Sender Lkhagvadorj, Long Qu, Weiguo Cai, Oliver P. Coutoure, C. Richard Barb, Gary J. Hausman, Dan Nettleton, Lloyd L. Anderson, Jack C. M. Dekkers, and Christopher K. Tuggle

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Assessing certainty of activation or inactivation in test–retest fMRI studies, Ranjan Maitra

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Initializing Partition-Optimization Algorithms, Ranjan Maitra

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Noise Estimation in Magnitude MR Datasets, Ranjan Maitra and David Faden

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Clustering in the Presence of Scatter, Ranjan Maitra and Ivan Peter Ramler

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The Foreign Policy of the Bush Administration: Terrorism and the Promotion of Democracy, James M. McCormick

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Testing for the Supremacy of a Multinomial Cell Probability, Dan Nettleton

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Sample Surveys, Sarah M. Nusser and Mike D. Larsen

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Statistical aspects of environmental risk assessment of GM plants for effects on non-target organisms, Joe N. Perry, Cajo J. F. ter Braak, Philip M. Dixon, Jian J. Duan, Rosie S. Hails, Alexandra Huesken, Marc Lavielle, Michelle Marvier, Michele Scardi, Kerstin Schmidt, Bela Tothmeresz, Frank Schaarschmidt, and Hilko van der Voet

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The B73 Maize Genome: Complexity, Diversity, and Dynamics, Patrick S. Schnable, Doreen Ware, Kai Ying, Cheng-Ting Yeh, Scott J. Emrich, Yi Jia, Ananth Kalyanaraman, An-Ping Hsia, Yan Fu, Sanzhen Liu, Alan M. Myers, Dan Nettleton, Srinivas Aluru, and et al.

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Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine, J. J. Uthe, Y. Wang, L. Qu, Dan Nettleton, C. K. Tuggle, and S. M. D. Bearson

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Transcript-Based Cloning of RRP46, a Regulator of rRNA Processing and R Gene–Independent Cell Death in Barley–Powdery Mildew Interactions, Liu Xi, Matthew J. Moscou, Yan Meng, Weihui Xu, Rico A. Caldo, Miranda Shaver, Dan Nettleton, and Roger P. Wise

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Estimating spatial covariance using penalised likelihood with weighted L1 penalty, Zhengyuan Zhu and Yufeng Liu

Submissions from 2008

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A statistical test to show negligible trend: Reply, Philip M. Dixon and Joseph H. K. Pechmann

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Agronomic and Economic Performance Characteristics of Conventional and Low-External-Input Cropping Systems in the Central Corn Belt, Matthew Z. Liebman, Lance R. Gibson, David N. Sundberg, Andrew Howard Heggenstaller, Paula R. Westerman, Craig Chase, Robert G. Hartzler, Fabian D. Menalled, Adam S. Davis, and Philip M. Dixon

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The War on Terror and Contemporary U.S.-European Relations, James M. McCormick

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Sampling Considerations for Disease Surveillance in Wildlife Populations, Sarah M. Nusser, William R. Clark, David L. Otis, and Ling Huang

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Considering Students' Perceptions: The Distance Education Student Satisfaction Model, Ismail Sahin and Mack C. Shelley

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Punishment, Property, and the Limits of Altruism: Locke's International Asymmetry, Alex Tuckness

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Analysis of Porcine Transcriptional Response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the Mesenteric Lymph Node, Yanfang Wang, Olivre P. Couture, Long Qu, Jolita J. Uthe, Shawn M. D. Bearson, Daniel Kuhar, Joan K. Lunney, Dan Nettleton, Jack C. M. Dekkers, and Christopher K. Tuggle

Submissions from 2007

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The modes of posterior distributions for mixed linear models, Alicia L. Carriquiry and Wolfgang Kliemann

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Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize Primary Root, Diana Dembinsky, Katrin Woll, Muhammad Saleem, Yan Liu, Yan Fu, Lisa A. Borsuk, Tobias Lamkemeyer, Claudia Fladerer, Johannes Madlung, Brad Barbazuk, Alfred Nordheim, Dan Nettleton, Patrick S. Schnable, and Frank Hochholdinger

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Review of "Biomeasurement", Philip M. Dixon

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Multivariate Gaussian Simulation Outside Arbitrary Ellipsoids, Nick Ellis and Ranjan Maitra

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The Influence of Custodial, Maintenance, and Residence Life Services on Student Satisfaction in Residence Halls, Li Lanfen, Elena Maximova, Kevin Saunders, Donald F. Whalen, and Mack C. Shelley

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Array-Based Genomic Comparative Hybridization Analysis of Field Strains of Mycoplasma hyopneumoniae, Melissa L. Madsen, Michael J. Oneal, Stuart W. Gardner, Erin L. Strait, Dan Nettleton, Eileen L. Thacker, and F. Chris Minion

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Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.), Kazuhiro Ohtsu, Marianne B. Smith, Scott J. Emrich, Lisa A. Borsuk, Ruilian Zhou, Tianle Chen, Xiaolan Zhang, Marja C. P. Timmermans, Jon Beck, Brent Buckner, Diane Janck-Buckner, Dan Nettleton, Michael J. Scanlon, and Patrick S. Schnable

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Exploring the Information in p‐Values for the Analysis and Planning of Multiple‐Test Experiments, David Ruppert, Dan Nettleton, and J.T. Gene Hwang

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Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium, Yanfang Wang, Long Qu, Jolita J. Uthe, Shawn M. D. Bearson, Daniel Kuhar, Joan K. Lunney, Oliver P. Couture, Dan Nettleton, Jack C. M. Dekkers, and Christopher K. Tuggle

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Spatial Analysis of Arabidopsis thaliana Gene Expression in Response to Turnip mosaic virus Infection, Chunling Yang, Rong Guo, Fei Jie, Dan Nettleton, Jiqing Peng, Tyrell Carr, Joanne M. Yeakley, Jian-Bing Fan, and Steven A. Whitham

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Laser Microdissection of Narrow Sheath Mutant Maize Uncovers Novel Gene Expression in the Shoot Apical Meristem, Xiaolan Zhang, Shahinez Madi, Lisa Borsuk, Dan Nettleton, Robert J. Elshire, Brent Buckner, Diane Janick-Buckner, Jon Beck, Marja Timmermans, Patrick S. Schnable, and Michael J. Scanlon

Submissions from 2006

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Stage-Specific Suppression of Basal Defense Discriminates Barley Plants Containing Fast- and Delayed-Acting Mla Powdery Mildew Resistance Alleles, Rico A. Caldo, Dan Nettleton, Jiqing Peng, and Roger P. Wise